| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,737,876 – 2,737,969 |
| Length | 93 |
| Max. P | 0.919331 |
| Location | 2,737,876 – 2,737,969 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 81.75 |
| Mean single sequence MFE | -26.38 |
| Consensus MFE | -18.68 |
| Energy contribution | -19.69 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2737876 93 + 22407834 CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCCAACUGCAUGCCCUUCCCUUU----CGAUUGCUCACUUGGGAUCCCAUUAAUUGGCA ..............(((((.....((((((((..(((((......))).))...((.....----.)))))))))).(((....)))....))))). ( -21.80) >DroSec_CAF1 156405 93 + 1 CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCAAACGGGGCGCCCUUCCCUUU----CGGCAACUCACUUGGGAUCCCAUUAAUUGGCA ..............(((((.....((((((......((((.((.((((......)))).))----.)))))))))).(((....)))....))))). ( -27.60) >DroSim_CAF1 160610 93 + 1 CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCCAACGGGGCGCCCUUCCCUUU----CGGCUACUCACUUGGGAUCCCAUUAAUUGGCA ..............(((((.....((((((((((((.((((....))))))..........----.)))))))))).(((....)))....))))). ( -33.80) >DroEre_CAF1 174676 79 + 1 CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCCAGCUGGGCGCCCUUCCC---CACAUGACUACUCAUUUGGGA--------------- .............((((......(....)((((((.....))))))))))......((---((.((((....)))).)))).--------------- ( -22.30) >consensus CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCCAACGGGGCGCCCUUCCCUUU____CGACUACUCACUUGGGAUCCCAUUAAUUGGCA .........(((((...(.....)((((((((((((.((((....))))))...............))))))))))..))))).............. (-18.68 = -19.69 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:34 2006