| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,732,307 – 2,732,425 |
| Length | 118 |
| Max. P | 0.633949 |
| Location | 2,732,307 – 2,732,425 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 87.28 |
| Mean single sequence MFE | -25.97 |
| Consensus MFE | -19.22 |
| Energy contribution | -20.67 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2732307 118 + 22407834 UUAAAGCUGCACUAUCUACAUAAGAUUAUAGUCUUAUGUAAAGUUAAACAUCUUGCUUGCAGACUGGGCUAAUUUACAUACCUAAUCUCUUAAGAUCUAGGAAGCGAUUAACUGUU-UA ...((((.........((((((((((....)))))))))).((((((.....((((((((.......))...........((((((((....)))).)))))))))))))))))))-). ( -25.00) >DroSec_CAF1 151104 108 + 1 UUUAAACGGCACUAUC-----------AUAGUCUUAUGUAAAGUAAGAGACCUUGCUUGCAGACUGGGCUAAUUUACAUACCUAAUCUCUUAAGAUCUAGGAAGUGAUUAACUGUUGUA .....((((((..(((-----------(((((((..(((((.(((((....))))))))))....)))))..........((((((((....)))).))))..)))))....)))))). ( -27.20) >DroSim_CAF1 155178 108 + 1 UUAAAACGGCACUAUC-----------AUAGUCUUAUAUAAAGUAAGAGAUCUUGCUUGCAGACUGGGCUAAUUUACAUACCUAAUCUCUCAAGAUCUAGGAAGUGAUUAACUGUUGUA .....((((((..(((-----------(((((((......(((((((....))))))).......)))))..........((((((((....)))).))))..)))))....)))))). ( -25.72) >consensus UUAAAACGGCACUAUC___________AUAGUCUUAUGUAAAGUAAGAGAUCUUGCUUGCAGACUGGGCUAAUUUACAUACCUAAUCUCUUAAGAUCUAGGAAGUGAUUAACUGUUGUA .....((((((..(((............((((((..(((((.(((((....))))))))))....)))))).........((((((((....)))).))))....)))....)))))). (-19.22 = -20.67 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:33 2006