Locus 952

Sequence ID 2L_DroMel_CAF1
Location 2,729,719 – 2,729,829
Length 110
Max. P 0.901521
window1529

overview

Window 9

Location 2,729,719 – 2,729,829
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 90.91
Mean single sequence MFE -31.06
Consensus MFE -24.04
Energy contribution -22.88
Covariance contribution -1.16
Combinations/Pair 1.21
Mean z-score -2.07
Structure conservation index 0.77
SVM decision value 1.02
SVM RNA-class probability 0.901521
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2729719 110 - 22407834
UGUAAUUUUGUGCUUAACGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCAGAGUUAACCAGCCAUUUCAAAUAGGGAAUUGCUCGUUUGGCCGGCCUGACAU
.....(((((((((((.((((((((....)))))))).)))...).))))))).(((((.((((((.(((.(((((......))))).))).))).....)))))))).. ( -29.40)
>DroSec_CAF1 148341 110 - 1
UGUAAUUUUGUGCUUAGCGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCAGAGUUAACCAGCCAUUUGAAAUGGGGAAUUGCUCGUUUGGCCGGCCUGACAU
.....((((((((.((.((((((((....))))))))....)).).))))))).(((((.(....((.((((.....((((((......)))))))))).)))))))).. ( -31.30)
>DroSim_CAF1 152369 110 - 1
UGUAAUUUUGUGCUUAGCGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCAGAGUUAACCAGCCAUUUGAAAUAGGGAAUUGCUCGUUUGGCCGGCCUGACAU
.....((((((((.((.((((((((....))))))))....)).).))))))).(((((.(....((.((((..(((.............)))..)))).)))))))).. ( -29.92)
>DroEre_CAF1 166571 109 - 1
UGUAAUUUUGUGCUUAGCUCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCGAAGUUAAGCAGCCAUUUGA-AAAGGGAAUUACUCGUCUGGUCGACUUGGCAU
..........(((((((((((((((....))))))........((((.......)))).)))))))))((((.((((-..(((((.....)).)))..))))..)))).. ( -28.70)
>DroYak_CAF1 157250 110 - 1
UGUAAUUUAGUGCUUAGCGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCGAAGUUAAGCAGCCGUUUCAAAAAGAGAAUUACUCGGCUGCUCGACUUGACAU
.........((((.((.((((((((....))))))))....)).).))).....(((.((((..((((((((.(((.......))).....))))))))..))))))).. ( -36.00)
>consensus
UGUAAUUUUGUGCUUAGCGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCAGAGUUAACCAGCCAUUUGAAAUAGGGAAUUGCUCGUUUGGCCGGCCUGACAU
.....((((((((.((.((((((((....))))))))....)).).))))))).(((((.(((..((((............(((.....)))..))))..)))))))).. (-24.04 = -22.88 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:30 2006