| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,727,737 – 2,727,839 |
| Length | 102 |
| Max. P | 0.655976 |
| Location | 2,727,737 – 2,727,839 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 92.11 |
| Mean single sequence MFE | -29.23 |
| Consensus MFE | -24.18 |
| Energy contribution | -24.63 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2727737 102 + 22407834 GAUGAUGAGUUAGACUGCUAGAUGUAGUGAAUUGUAGCUGCUUGUGGCAUUUCAAGCACAGUUGUUGCAAUUGUAUCUACUAAUGUUGCAGGUUUGUUUACU .......((((..(((((.....))))).))))(((((.(((((..(((((...((.(((((((...)))))))..))...)))))..)))))..).)))). ( -25.20) >DroSec_CAF1 146444 100 + 1 GAUGA--AGUUAGACCGCCAGUAGUAGUGGAUUGUAGCUGCUUGUGGCAUUUAAAGCACACAUGUUGCAGUUGUAUCUGCUAAUGUUGCAGGUUUGUUUACU .....--...((((((((((..((((((........))))))..)))).......(((.((((...((((......))))..))))))).))))))...... ( -32.40) >DroSim_CAF1 150410 100 + 1 GAUGA--AGUUAGACCGCUAGUAGUAGUGGAUUGUAGCUGCUUGUGGCAUUUAAAGCACACAUGUUGCAGUUGUAUCUGCUAAUGUUGCAGGUUUGUUUACU .....--...((((((((((..((((((........))))))..)))).......(((.((((...((((......))))..))))))).))))))...... ( -30.10) >consensus GAUGA__AGUUAGACCGCUAGUAGUAGUGGAUUGUAGCUGCUUGUGGCAUUUAAAGCACACAUGUUGCAGUUGUAUCUGCUAAUGUUGCAGGUUUGUUUACU ..........((((((((...((((((..(((((((((....((((((.......)).)))).)))))))))....)))))).....)).))))))...... (-24.18 = -24.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:28 2006