Locus 95

Sequence ID 2L_DroMel_CAF1
Location 311,494 – 311,595
Length 101
Max. P 0.654469
window140

overview

Window 0

Location 311,494 – 311,595
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.05
Mean single sequence MFE -27.09
Consensus MFE -18.42
Energy contribution -19.17
Covariance contribution 0.75
Combinations/Pair 1.24
Mean z-score -1.76
Structure conservation index 0.68
SVM decision value 0.25
SVM RNA-class probability 0.654469
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 311494 101 + 22407834
AUCUGUGCGAUGA-------------AUUCGAAGCGGGAAGCUGCAAAAAGCUAAUGAGUAGCGCAUCAGAUA------UCACAUCAGCUCCUGGUGCCAAUUAGCGAAACGCUUUAAGU
((((((((.....-------------.......((((....)))).....((((.....))))))).))))).------...((((((...))))))......((((...))))...... ( -25.10)
>DroSec_CAF1 15697 101 + 1
AUCUGAGCGAUGA-------------AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGUAGCGCAUCUGAUA------UCACAUCAGCUCGUUGUGCCAAUUAGUGAAACGCUUUAAGU
....(((((....-------------.......((((....)))).....((((((.....(((((.(((((.------....))))).....)))))..))))))....)))))..... ( -27.50)
>DroSim_CAF1 17508 101 + 1
AUCUGAGCGAUGA-------------AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGUAGCGCAUCUGAUA------UCACAUCAGCUCGUGGUGCCAAUUAGCGAAACGCUUUAAGU
....(((((....-------------.......((((....)))).....((((((..(((.(((..(((((.------....)))))...))).)))..))))))....)))))..... ( -32.90)
>DroEre_CAF1 17032 101 + 1
AUCCGACCGAUGA-------------AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGCAGCGCAUCAGAUA------UCACAUCAGCCCGUGGUGCCAAUUAGCGAAACGCUUUAAGU
.......(((...-------------..)))..((((....)))).....((((((..(((.(((....(((.------....))).....))).)))..)))))).............. ( -25.80)
>DroYak_CAF1 17449 101 + 1
AUCCGAGCGAUGA-------------AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGCAGCGCAUCAAAUA------UCACAUCAGCUCGUGGUGCCAAUUAGCGAAACGCUUUAAGU
....(((((....-------------.......((((....)))).....((((((..(((.(((........------............))).)))..))))))....)))))..... ( -29.15)
>DroAna_CAF1 25360 114 + 1
AUCUGAGCCAUUUUCUCUUUGAGAUAAAACGAAA-GAAAAAUAAUAAAAAGCUAAUGAACAG--CAUCAGCUAUCAGCAUCACAUCAGCUCGUAUCGCCAAUUAGCGGAGCGCUCU---U
....((((..((((((.((((........)))))-))))).........((((.(((.....--))).))))...............((((....(((......))))))))))).---. ( -22.10)
>consensus
AUCUGAGCGAUGA_____________AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGCAGCGCAUCAGAUA______UCACAUCAGCUCGUGGUGCCAAUUAGCGAAACGCUUUAAGU
....(((((........................((((....)))).....((((((..(((.(((..........................))).)))..))))))....)))))..... (-18.42 = -19.17 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:35 2006