| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,726,502 – 2,726,606 |
| Length | 104 |
| Max. P | 0.590217 |
| Location | 2,726,502 – 2,726,606 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.27 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -6.38 |
| Energy contribution | -6.93 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2726502 104 - 22407834 GAGUCAACAGGCACUUAUCGGAAUCAGAAUCAAUUGUGAUUGGAA----UAAGAU----C--ACACAGUUUGAUGAAUGCAUUACGUGUAUCUAAUUGCAAUUUU------AUUGACUAC .((((((...(((.((((((((............(((((((....----...)))----)--)))...)))))))).)))......((((......)))).....------.)))))).. ( -22.16) >DroPse_CAF1 179878 112 - 1 UACUCAAUUGCCAUUCAACAA------AAUCAAUUGUGAUUGGAGCCGAUCAAAUUGAUUGUAG--AAUAUGGUAAGUGCAUUACGUGUAAGUAAUUGUGAUUCGAAUGCAAUCGAAGAC .......(((((((.......------((((((((.((((((....))))))))))))))....--...)))))))..(((((((......)))).)))..(((((......)))))... ( -28.24) >DroSim_CAF1 148513 102 - 1 GAGUCAACAAGCACUUAUCGGAAUCUGAAUCAAUUGUGAUUGGAA----UAAGAU----C--AC--AGUUUGAUGAAUGCAUUACGUGUAUCUAAUUGCAAUUUU------AUUGACUAC .((((((...(((.((((((((.......))((((((((((....----...)))----)--))--)))))))))).)))......((((......)))).....------.)))))).. ( -24.00) >DroEre_CAF1 163637 96 - 1 GAGUCAAUAGGCACUUGUCUA------AACCCAUUGUGAUGGGAA----UAAGAU----C--AC--AAUUUGAUGAAUGCACUACGUGUAUCUAAUUGCAAUUUU------AUUGACUAC .((((..(((((....)))))------..(((((....)))))((----((((((----.--.(--((((.((((.(((.....))).)))).)))))..)))))------))))))).. ( -25.90) >DroYak_CAF1 153546 96 - 1 GAGUCAACAGGCACUUGUCUA------AAUCAAUUGUGAUUGGAA----UAAGAU----C--AC--AAUUUGAUGAAUGCAUUACGUGUAUCUAAUUGCAAUUUU------AUUGACUAC .((((((.((((....)))).------....(((((..((((((.----....((----(--(.--....))))...(((((...)))))))))))..)))))..------.)))))).. ( -23.10) >DroPer_CAF1 176606 112 - 1 UACUCAAUUGCCAUUCAACAA------AAUCAAUUGUGAUUGGAGCCGAUCAAAUUGAUUGUAG--AAUAUGGUAAGUGCAUUACGUGUAAGUAAUUGUGAUUCGAAUGCAAUCGAAGAC .......(((((((.......------((((((((.((((((....))))))))))))))....--...)))))))..(((((((......)))).)))..(((((......)))))... ( -28.24) >consensus GAGUCAACAGGCACUUAUCAA______AAUCAAUUGUGAUUGGAA____UAAGAU____C__AC__AAUUUGAUGAAUGCAUUACGUGUAUCUAAUUGCAAUUUU______AUUGACUAC .((((((......................(((((....)))))..............................((.((((((...)))))).))..................)))))).. ( -6.38 = -6.93 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:27 2006