Locus 948

Sequence ID 2L_DroMel_CAF1
Location 2,724,863 – 2,724,971
Length 108
Max. P 0.957427
window1525

overview

Window 5

Location 2,724,863 – 2,724,971
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 91.48
Mean single sequence MFE -24.22
Consensus MFE -21.38
Energy contribution -21.30
Covariance contribution -0.08
Combinations/Pair 1.21
Mean z-score -1.66
Structure conservation index 0.88
SVM decision value 1.48
SVM RNA-class probability 0.957427
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2724863 108 + 22407834
ACAAUUUAACAGUACCAUAAACCCGACAUAGACUUGCAAUUGCUAAUUAAUUCAAAUGAGUUGCUCAUGUGGAAACGCGUUCCAACCGAAAGUCUAUUGGGUUAGAUC
...................(((((((..(((((((((....)).............((.((((...(((((....)))))..)))))).))))))))))))))..... ( -27.00)
>DroSec_CAF1 143671 108 + 1
ACAAUUUAACAGUACCAUAAACCCGGCAUGGACCUGCAAUUGCUAAUUAAUUCAAAUAAGUUUCUCACGUGGAAACGCGUUCCAACAGAAAGUCUAUUGGGUUAGAUC
...................((((((..((((((..((....))................(((....(((((....)))))...))).....))))))))))))..... ( -23.00)
>DroSim_CAF1 146859 107 + 1
ACAAUUUAACAGUACCAUAAACCCGGCAUGGACCUGCAAUUGCUAAUUAAUUCAAAUGAGUUUCUCACGUGGAAACGCGUU-CAACCGAAAGUCUAUUGGGUUAGAUC
.(((((...(((..((((.........))))..))).)))))....(((((((((..((.((((..(((((....))))).-.....)))).))..)))))))))... ( -24.20)
>DroEre_CAF1 161942 108 + 1
AAAAUUUAGCAGUACCAUAAACCCGACAUGGUCUUGCAAUCGCUAAUUAACACAAAUGAGUUUUUCACGUGGAAACGCGUUCCAGCCGAAAGUCUAUUGGGUUAAAUC
........((((.(((((.........))))).)))).........(((((.(((...((.((((((((((....))))).......))))).)).))).)))))... ( -23.41)
>DroYak_CAF1 151841 108 + 1
ACAAUUUAGCAGUACCAUAAACCCAACUUGAACUUGCAAUCGCUAAUUAAUUCAAAUGCGUUUCUCACGUGGAAACGCGUUCCAACCGAAAGUCUAUUGGGUUAGAUC
...................(((((((...((((..((....))..............((((((((.....))))))))))))....(....)....)))))))..... ( -23.50)
>consensus
ACAAUUUAACAGUACCAUAAACCCGACAUGGACUUGCAAUUGCUAAUUAAUUCAAAUGAGUUUCUCACGUGGAAACGCGUUCCAACCGAAAGUCUAUUGGGUUAGAUC
...................(((((((..(((((((((....))................(((....(((((....)))))...)))...))))))))))))))..... (-21.38 = -21.30 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:26 2006