Locus 945

Sequence ID 2L_DroMel_CAF1
Location 2,721,606 – 2,721,697
Length 91
Max. P 0.904130
window1520

overview

Window 0

Location 2,721,606 – 2,721,697
Length 91
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 86.00
Mean single sequence MFE -18.50
Consensus MFE -15.20
Energy contribution -15.20
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.67
Structure conservation index 0.82
SVM decision value 1.03
SVM RNA-class probability 0.904130
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2721606 91 + 22407834
CUGUAUCUGCA---------CCAGGCACACCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAGAGA--CAAAAACAACAAAAUCAU
.(((.(((((.---------....))............((((((....((((((.........))))))..))))))))).)--))................ ( -18.80)
>DroPse_CAF1 169742 90 + 1
AUAUACCCGU----------ACAUGCACAUCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAAAGA--CAAAAACAACAAAAUCAU
........((----------...(((.......)))..((((((....((((((.........))))))..))))))....)--)................. ( -16.40)
>DroEre_CAF1 158695 90 + 1
CUGUGUCCGC----------CCAGGCACACCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAGAGA--CAAAAACAACAAAAUCAU
...(((((((----------....))............((((((....((((((.........))))))..)))))).).))--))................ ( -21.20)
>DroYak_CAF1 148431 100 + 1
CUGUAUGGGCACACAUACUGCCAGGCACACCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAGAGA--CAAAAACAACAAAAUCAU
..(((((......)))))(((..((....))..)))..((((((....((((((.........))))))..)))))).....--.................. ( -22.00)
>DroAna_CAF1 238665 84 + 1
---------CAC--------ACAUGCACAUCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAAAGACACAAAAACAACAA-AGCAU
---------...--------...(((.......)))..((((((....((((((.........))))))..))))))...................-..... ( -16.20)
>DroPer_CAF1 166836 90 + 1
AUAUACCCGU----------ACAUGCACAUCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAAAGA--CAAAAACAACAAAAUCAU
........((----------...(((.......)))..((((((....((((((.........))))))..))))))....)--)................. ( -16.40)
>consensus
CUGUAUCCGC__________ACAGGCACACCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAAAGA__CAAAAACAACAAAAUCAU
........................((.......))...((((((....((((((.........))))))..))))))......................... (-15.20 = -15.20 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:21 2006