| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,718,685 – 2,718,798 |
| Length | 113 |
| Max. P | 0.850193 |
| Location | 2,718,685 – 2,718,798 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.94 |
| Mean single sequence MFE | -41.35 |
| Consensus MFE | -23.82 |
| Energy contribution | -23.12 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.850193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2718685 113 - 22407834 AUGUG-UGGCAUGUGGCAAUCUUACAUUCCUGGCCAGUGUCUGGCCAUAGGUGACAUAGGCUGCCCCCUGCUCCGGCUGCAAUUGCAUGGCCAAUCUCUGCUGAUGCUCGGCCU ....(-..(((.(.((((..((..((((..(((((((...)))))))..))))....))..)))).).)))..)(((((.....(((((((........))).)))).))))). ( -41.40) >DroPse_CAF1 166948 110 - 1 AUU---GGGCUUAU-CUGUACUCACAUUCCUGGCCAGCGUCUGGCCAAAGGUCACAUAGGCAGCUCCGUGCUGGGGCUGCAGCUGCAUGGCCAAUCGCUGCUGCCGCUCCGCCU ...---((((....-.(((....))).....((((((((..((((((..(((.......((((((((.....)))))))).)))...))))))..)))))..))).....)))) ( -43.90) >DroEre_CAF1 155893 108 - 1 ------UUGCAUGUGACACACUUACAUUCCUGGCCAGCGUCUGGCCAUAGGUGACAUAGGCUGCCCCCUGCUCCGGCUGCAAAUGCAGCGCCAGUCUCUGCUGAUGCUCGGCCU ------....((((((.....))))))....((((((((((.(((....((.(((...(((.((.....))....(((((....)))))))).))).))))))))))).)))). ( -38.00) >DroYak_CAF1 145344 108 - 1 ------UCACAUGUAACUAGCUUACAUUCCUGGCCAGCGUCUGGCCAUAGGUGACAUAGGCUGUCCCCUGCUCCGGCUGCAAAUGCAGCGCCAAUCGCUGCUGCUGCUCCGCCU ------....((((((.....))))))...(((((((...)))))))((((.((((.....)))).))))....(((.(((...((((((.....))))))...)))...))). ( -38.50) >DroAna_CAF1 232568 114 - 1 AAGCCCGAGUAUUUUUUUUACUUACAUUUCUGGCCAGCGUCUGGCCGUAGGUCACAUAGACGGCUCCCUGCCGCGGUUGCAGAUGCAACGCCAAUCGCUGUUGCCUCUCGGCCU ..(((.(((((.......)))))........((((((((..(((((((..(((.....)))(((.....))))))(((((....)))))))))..)))))..)))....))).. ( -42.40) >DroPer_CAF1 163922 108 - 1 AU-----GGCUUAU-CAGUACUCACAUUCCUGGCCAGUGUCUGGCCAAAGGUCACAUAGGCAGCUCCGUGCUGGGGCUGCAGCUGCAUGGCCAAUCGCUGCUGCCGCUCCGCCU .(-----(((((..-..((....)).....(((((((...))))))).))))))...(((((((.....)))(((((.(((((.((((.....)).)).))))).))))))))) ( -43.90) >consensus AU____UGGCAUGU_ACAUACUUACAUUCCUGGCCAGCGUCUGGCCAUAGGUCACAUAGGCUGCCCCCUGCUCCGGCUGCAAAUGCAUCGCCAAUCGCUGCUGCCGCUCCGCCU ..............................(((((((...))))))).((((......(((.((.....))...((((((....)))..))).......)))........)))) (-23.82 = -23.12 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:20 2006