Locus 94

Sequence ID 2L_DroMel_CAF1
Location 310,898 – 310,994
Length 96
Max. P 0.863785
window139

overview

Window 9

Location 310,898 – 310,994
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 97.29
Mean single sequence MFE -26.04
Consensus MFE -23.58
Energy contribution -23.82
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.47
Structure conservation index 0.91
SVM decision value 0.84
SVM RNA-class probability 0.863785
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 310898 96 + 22407834
GUUCCUUUUCAAGUUUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGAAAGG
.....(((((((((((...((..(((....)))..))..))))))))))).((((((.((((((.((......))..))))))))))))(....). ( -25.40)
>DroSec_CAF1 15102 96 + 1
GUUCCUUUUCAAGUUUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGAAAGG
.....(((((((((((...((..(((....)))..))..))))))))))).((((((.((((((.((......))..))))))))))))(....). ( -25.40)
>DroSim_CAF1 16881 96 + 1
GUUCCUUUUCAAGUUUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGAAAGG
.....(((((((((((...((..(((....)))..))..))))))))))).((((((.((((((.((......))..))))))))))))(....). ( -25.40)
>DroEre_CAF1 16427 96 + 1
GUUCCUUUUCAAGUCUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGUAAGG
.....((((((((((.(((........))).)))))))))).((((...(.((((((.((((((.((......))..))))))))))))).)))). ( -24.00)
>DroYak_CAF1 16825 96 + 1
GUUCCUUUUCAAGUUGAAAUAUUUCCCUUUCGAUUUGGAAAACUUGAAAGAUCUCCGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGUAAGG
.....((((((((((((((........)))))))))))))).((((...(.((((((.((((((.((......))..))))))))))))).)))). ( -30.00)
>consensus
GUUCCUUUUCAAGUUUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGAAAGG
...(((((((((((((...((..((......))..))..))))))))))..((((((.((((((.((......))..))))))))))))....))) (-23.58 = -23.82 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:33 2006