| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,693,510 – 2,693,600 |
| Length | 90 |
| Max. P | 0.947868 |
| Location | 2,693,510 – 2,693,600 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 91.21 |
| Mean single sequence MFE | -29.09 |
| Consensus MFE | -24.94 |
| Energy contribution | -25.33 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.947868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2693510 90 - 22407834 ------------GCUGCACUUUAUCUUAGUGCGGCGGUCUUAGUUGGCGAAAUUGUGUGCAACCACGAAAAUCUAAUAAGCGCGCAAAUUUGUUGACAUUGC ------------((((((((.......)))))))).......((..(((((.((((((((...................)))))))).)))))..))..... ( -33.21) >DroVir_CAF1 170395 102 - 1 GCCGCUGCCGCUGCUGCACUUUAUCUUUCUGUGGCGGUCUUAGUUGGCGAAAUUGUGUGCAACCACGAAAAUCUAAUAAGCGCGCAAAUUUGUUGACAUUGC ...((((((((...................))))))))....((..(((((.((((((((...................)))))))).)))))..))..... ( -31.22) >DroWil_CAF1 208457 90 - 1 ------------ACUGCACUUUAUCUCUCUGCGGCGGUCUUAGUUGGCGAAAUUGUGUGCAACCACGAAAAUCUAAUAAGCGCGCAAAUUUGUUGACAUUGC ------------.(((((...........)))))........((..(((((.((((((((...................)))))))).)))))..))..... ( -23.41) >DroMoj_CAF1 171910 96 - 1 GCCG------CUGCUGCACUUUAUCUUUCUGCGGCGGUCUUAGUUGGCGAAAUUGUGUGCAACCACGAAAAUCUAAUAAGCGCGCAAAUUUGUUGACAUUGC ((((------((((................))))))))....((..(((((.((((((((...................)))))))).)))))..))..... ( -33.00) >DroAna_CAF1 196075 90 - 1 ------------GCUACAUUUUAUCUCGCUACGGCGGUCUUAGUUGGCGAAAUUGUGUGCAACCACGAAAAUCUAAUAAGCGCGCAAAUUUGUUGACAUUGC ------------.............((((....)))).....((..(((((.((((((((...................)))))))).)))))..))..... ( -26.11) >DroPer_CAF1 138140 90 - 1 ------------GCUGCACUUUAUCUCUCUGCGGCGGUCUUAGUUGGCGAAAUUGUGUGCAACCACGAAAAUCUAAUAAGCGCGCAAAUUUGUUGACAUUGC ------------((((((...........)))))).......((..(((((.((((((((...................)))))))).)))))..))..... ( -27.61) >consensus ____________GCUGCACUUUAUCUCUCUGCGGCGGUCUUAGUUGGCGAAAUUGUGUGCAACCACGAAAAUCUAAUAAGCGCGCAAAUUUGUUGACAUUGC ............((((((...........)))))).......((..(((((.((((((((...................)))))))).)))))..))..... (-24.94 = -25.33 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:11 2006