Locus 937

Sequence ID 2L_DroMel_CAF1
Location 2,690,851 – 2,690,956
Length 105
Max. P 0.782262
window1508

overview

Window 8

Location 2,690,851 – 2,690,956
Length 105
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 84.64
Mean single sequence MFE -25.65
Consensus MFE -19.25
Energy contribution -20.33
Covariance contribution 1.09
Combinations/Pair 1.19
Mean z-score -2.70
Structure conservation index 0.75
SVM decision value 0.56
SVM RNA-class probability 0.782262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2690851 105 + 22407834
GCCCCAGUCGCUUCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGUGCCAGUAUCAAAAACUCCUUGAUUUACUGACUCAAC-AAUAUGGGU--GCUCCUCC
((((((............(((.((((......)))).))).......((((.(.(((((((((.......))))..))))).).))))-....)))).--))...... ( -25.00)
>DroSec_CAF1 110130 107 + 1
GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAUUCAGUAUCAAAAACUCGUUGAUUUACUGGCUCAGC-AACAUGGGCGCGCUCCUCC
((((((............(((.((((......)))).))).......(((((..(((((((((.......))))..)))))..)))))-....)))).))........ ( -27.70)
>DroSim_CAF1 113158 107 + 1
GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGCCAGUAUCAAAAACUCGUUGAUUUACUGGCUCAAC-AACAUGGGCGCGCUCCUCC
((((((............(((.((((......)))).))).......((((((((((((((((.......))))..))))))))))))-....)))).))........ ( -36.60)
>DroEre_CAF1 125065 97 + 1
GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGCAACUAUCAAAAACUCGUUGAUUUACUAGUUCAGC-CAUAUGGGU----------
((((.(((..(((.(((((((.((((......)))).))).....)))).)))..)))...........(((((.........)))))-.....))))---------- ( -20.20)
>DroYak_CAF1 114961 98 + 1
GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGCAAGUAUCAAAAACUCGUUGAUUCACUGGCUCAAACAACAAGGCA----------
(((...............(((.((((......)))).)))........((((((.((((((((.......)))))..))).)))))).......))).---------- ( -21.80)
>DroAna_CAF1 193361 101 + 1
GCCCUAGUCGCUCCACUCGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGGAAGUAUCAAAAACUCGAUGAUUUACUUGUUCAAC-AACAUAGAG------CCCC
.........((((.....(((.((((......)))).))).......((((((.((((((((.........)))..))))).))))))-......)))------)... ( -22.60)
>consensus
GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGCAAGUAUCAAAAACUCGUUGAUUUACUGGCUCAAC_AACAUGGGC______CUCC
..((((............(((.((((......)))).))).......((((((((((((((((.......)))))..))))))))))).....))))........... (-19.25 = -20.33 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:10 2006