Locus 936

Sequence ID 2L_DroMel_CAF1
Location 2,690,387 – 2,690,492
Length 105
Max. P 0.668796
window1507

overview

Window 7

Location 2,690,387 – 2,690,492
Length 105
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.14
Mean single sequence MFE -24.52
Consensus MFE -16.30
Energy contribution -16.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.66
SVM decision value 0.29
SVM RNA-class probability 0.668796
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2690387 105 + 22407834
UUUUUGUUUGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCACAUCGCCCAGCCAC--CCAGCCAUCCAAACACCCACC--
....((((((((((((((...))))))).................(((.((.....((((((.((......)))))))).....--)).)))..)))))))......-- ( -28.10)
>DroPse_CAF1 137621 90 + 1
UUUUUGUUUGGGCAGUUUUAUGAAUUGUUUCAAUGCUCAUUUACCGGUUGGCCUAAUGGGUGCAUUGCCUC----------CAC--CCACACACCC----ACUGGC---
....((..((((((......((((....)))).))))))..))(((((.((.....((((((.........----------)))--)))....)).----))))).--- ( -23.50)
>DroEre_CAF1 124620 103 + 1
UUUUUGUUUGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCACAUCGCCCAGACAC--CCACACGCCC----ACACGCCCG
.........((((.((...((((...((......))))))..))..((.(((....(((((((...((......))...).)))--)))...))).----))..)))). ( -27.50)
>DroYak_CAF1 114508 97 + 1
UUUUUGUUUGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCACAACGCCCAACCAAAUCCAG----CC----AAACA----
....((((((((((((((...))))))).................(((.(((......(((.....))).....)))..)))........----))----)))))---- ( -22.90)
>DroAna_CAF1 191790 89 + 1
UUUUCUUUGGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCGUAUUGCCGUAAUAU--CCAC----C--------------
......((((((((((((...))))))))))))...........((((((((..((((....))))))))....))))......--....----.-------------- ( -21.60)
>DroPer_CAF1 134490 90 + 1
UUUUUGUUUGGGCAGUUUUAUGAAUUGUUUCAAUGCUCAUUUACCGGUUGGCCUAAUGGGUGCAUUGCCUC----------CAC--CCACACACCC----ACUGGC---
....((..((((((......((((....)))).))))))..))(((((.((.....((((((.........----------)))--)))....)).----))))).--- ( -23.50)
>consensus
UUUUUGUUUGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCACAUCGCCCA__CAC__CCACACACCC____ACACGC___
..........((((((....((((....))))..(((((((..((....))...)))))))..))))))........................................ (-16.30 = -16.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:09 2006