Locus 935

Sequence ID 2L_DroMel_CAF1
Location 2,686,517 – 2,686,610
Length 93
Max. P 0.941338
window1506

overview

Window 6

Location 2,686,517 – 2,686,610
Length 93
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 74.92
Mean single sequence MFE -24.80
Consensus MFE -12.75
Energy contribution -13.50
Covariance contribution 0.75
Combinations/Pair 1.15
Mean z-score -2.39
Structure conservation index 0.51
SVM decision value 1.32
SVM RNA-class probability 0.941338
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2686517 93 + 22407834
AAAAGGUGAAUCAGUAAAAGUGGAUUUCAACCCC-CCCGGAGUGAAGUCCUCUUUGGCAAAAUCUGAUUGUUAAUGAA--------------------------AAACUAUACAUGAAAU
........((((((..((((.((((((((..((.-...))..)))))))).))))........)))))).........--------------------------................ ( -20.10)
>DroSec_CAF1 105811 94 + 1
AAAAGGUGAAUCAGUAAAAGUGGAUUUCAACGCCAUGCGGGGUGAAGUCCUCUUUGGGAAAAUCAGAUUGUUAAUGGG--------------------------AAACUAUGCAAGAAAU
....(((...((....((((.((((((((.(.((....)).))))))))).))))..))..)))...((((..((((.--------------------------...))))))))..... ( -26.00)
>DroSim_CAF1 107554 94 + 1
AAAAGGUGAAUCAGUAAAAGUGGAUUUCAACGCCAUGCGGAGUGAAGUCCUCUUUGGGAAAAUCAGAUUGUUAUUGGG--------------------------AAACUAUGCAAGAAAU
....(((...((....((((.((((((((.(((...)))...)))))))).))))..))..)))...((((...(((.--------------------------...))).))))..... ( -25.60)
>DroYak_CAF1 110575 117 + 1
---UGGUGAAUCGGUAAAAGUGGAUUUUAACCCUGUGCGGAUUGAACUCAACUUUGGGAAAAUCCAAUUGUUAUUGGGAAACUUGUAAGCAUCUACUUUAGCCAGAACUAUACAUGAAAU
---((((.....(((.((((((((...........((((((((...((((....))))..))))).....((((.((....)).))))))))))))))).)))...)))).......... ( -27.50)
>consensus
AAAAGGUGAAUCAGUAAAAGUGGAUUUCAACCCCAUGCGGAGUGAAGUCCUCUUUGGGAAAAUCAGAUUGUUAAUGGG__________________________AAACUAUACAAGAAAU
........((((((..((((.((((((((...((....))..)))))))).))))........))))))................................................... (-12.75 = -13.50 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:08 2006