Locus 933

Sequence ID 2L_DroMel_CAF1
Location 2,685,552 – 2,685,644
Length 92
Max. P 0.712609
window1503

overview

Window 3

Location 2,685,552 – 2,685,644
Length 92
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 85.73
Mean single sequence MFE -20.93
Consensus MFE -20.68
Energy contribution -20.23
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -1.19
Structure conservation index 0.99
SVM decision value 0.38
SVM RNA-class probability 0.712609
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2685552 92 + 22407834
AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCA-------UUUUACUUUUUCUCCU
......((((..((((((.((.((((((.((((..(((((.(((....))).)))))..))))..))...)))).)-------)...))))))..)))) ( -20.40)
>DroPse_CAF1 132485 86 + 1
AACGCCAGGAACGGAAGCCAUUGAGGCUAUCGGACGGAGACACGCUUCCGUUUCUCUACUUGAAC---UCCCUCCU-------CCC---UCCCCCCCCA
......((((((((((((..((((.....))))..(....)..))))))))))))..........---........-------...---.......... ( -21.10)
>DroSec_CAF1 104868 92 + 1
AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCA-------UUUUACUUUUUCUCCU
......((((..((((((.((.((((((.((((..(((((.(((....))).)))))..))))..))...)))).)-------)...))))))..)))) ( -20.40)
>DroSim_CAF1 106598 92 + 1
AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCA-------UUUUACUUUUUCUCCU
......((((..((((((.((.((((((.((((..(((((.(((....))).)))))..))))..))...)))).)-------)...))))))..)))) ( -20.40)
>DroEre_CAF1 119746 99 + 1
AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCUUUCGUUUUUUUUUUCUUCUUCCU
((((..((((..(((((((.....)))).((((..(((((.(((....))).)))))..)))).....))).))))..))))................. ( -22.20)
>DroPer_CAF1 129330 82 + 1
AACGCCAGGAACGGAAGCCAUUGAGGCUAUCGGACGGAGACACGCUUCCGUUUCUCUACUUGAAC---UCCCUCCU--------------CCCCCCCCA
......((((((((((((..((((.....))))..(....)..))))))))))))..........---........--------------......... ( -21.10)
>consensus
AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCA_______UUUUACUCUUCCUCCU
......((((((((((((..((((.....))))..(....)..))))))))))))............................................ (-20.68 = -20.23 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:05 2006