| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,671,730 – 2,671,827 |
| Length | 97 |
| Max. P | 0.588333 |
| Location | 2,671,730 – 2,671,827 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.80 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -19.31 |
| Energy contribution | -19.70 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2671730 97 + 22407834 ACUUGGGAUUUAUUUUCAAUGUAGCCCUGCAAAUGGCAGCUGCUUGUUGGCACUGUCAACAAAGCUAUAAUCUAGUGAGG----ACACUGUGGAUAGCCGU----------- ..(((..(.....)..))).(((((..(((.....))))))))((((((((...)))))))).(((((....(((((...----.)))))...)))))...----------- ( -26.10) >DroSec_CAF1 91569 97 + 1 ACUUGGGGUUUAUUUUCAAUGUGGCCUUGCAGAUGGCAGCUGCUUGUUGGCACUGUCAACAGAGCUAUAAUCUAGUGAGG----ACACUGUGAAUAGCUCU----------- ....((((((....((((..(((.(((..(((((...((((.((.((((((...))))))))))))...)))).)..)))----.)))..)))).))))))----------- ( -33.70) >DroSim_CAF1 93100 97 + 1 ACUUGGGGUUUAUUUUCAAUGUGGCCCUGCAGAUGGCAGCUGCUUGUUGGCACUGUCAACAGAGCUAUAAUCUAGUGAGG----ACACUGUGAAUAGCUAU----------- .(((((((((............))))))).)).((((((.((((....))))))))))....((((((..(((((((...----.))))).))))))))..----------- ( -29.20) >DroEre_CAF1 105580 108 + 1 ACUUGGGGUUUAUUUUCAAUGUGGCACUGCAAAUGGCAGCUGCUUGCUGGCACUGCCAACAAAGCUAUAAUCUAGUGAGC----AGCCUGUGGAUAGCUCUGUAAAGCUCUG ....(((((((........((((((..((....((((((.((((....)))))))))).))..)))))).......((((----..((...))...))))....))))))). ( -31.40) >DroYak_CAF1 95353 97 + 1 ACUUGGGGUUCAUUUUCAACGUGGCCCUGCAAAUGGCAACUGCUUGCUGGCACUGCCAACAGAGCUUCAAUCUAGUGAGG----AGCCUUUGGAUAGUUCU----------- .((..((((((.........(.(((.(((....(((((..((((....)))).))))).))).))).)..((....)).)----)))))..))........----------- ( -26.50) >DroPer_CAF1 113327 101 + 1 ACUUGGGCUUCAUCGUCAAUGUGGCUCUUCAGAUGUCGGCAGCCUGUUGGCACUGCCAGCAGAGCUACAACCUUGUGAGGCUCUAUCCUCCCGACUCCUCC----------- ....(((((((((......(((((((((.(.(....)(((((((....)))..)))).).))))))))).....)))))))))..................----------- ( -34.90) >consensus ACUUGGGGUUUAUUUUCAAUGUGGCCCUGCAAAUGGCAGCUGCUUGUUGGCACUGCCAACAGAGCUAUAAUCUAGUGAGG____ACACUGUGGAUAGCUCU___________ ........((((((.....((((((.(((....((((((.((((....)))))))))).))).))))))....))))))................................. (-19.31 = -19.70 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:04 2006