Locus 931

Sequence ID 2L_DroMel_CAF1
Location 2,671,369 – 2,671,487
Length 118
Max. P 0.915643
window1500 window1501

overview

Window 0

Location 2,671,369 – 2,671,487
Length 118
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.73
Mean single sequence MFE -44.75
Consensus MFE -33.65
Energy contribution -37.18
Covariance contribution 3.53
Combinations/Pair 1.13
Mean z-score -2.26
Structure conservation index 0.75
SVM decision value 1.10
SVM RNA-class probability 0.915643
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2671369 118 + 22407834
ACGCUGCCCAGUUUUCUGGCUCUGCAGGUGCAGAUUAUAUCCUUUAUCCUGGAGGUCAUGAAGGUGAACAUAAGGGUUCGCCAGACCAAGCUGCAGCUGCUGAUUCUGGCCAGGGAAU
..........(((..(((((((.((((.(((((......(((........)))((((.....(((((((......))))))).))))...))))).)))).)).....)))))..))) ( -46.20)
>DroPse_CAF1 116226 118 + 1
ACACUGCCCAGCUUCCUGGGCCUGCAGUUCCAGAUCAUAGCCUUCAUCGCACAGGUCAUGUAUGUGAACCUUCGCGUUCGCCUGGCCCGCCGCCAGCUGCAGGCUCUGGCCCGGGAGC
...((.(((.(((....((((((((((............((......(((..(((((((....))).))))..)))...))(((((.....))))))))))))))).)))..))))). ( -44.00)
>DroSec_CAF1 91208 118 + 1
ACGCUGCCCAGUUUACUGGCACUGCAGAUGCAGAUUAUAUCCUUUAUCCUGGAAGUCAUGAAGGUGAACAUAAAGGUUCGCCAGACCAAGCUGCAGCUGCAGAUCCUGGCCAGGGAAU
....((((.((....))))))((((((.(((((......(((........))).........(((((((......)))))))........))))).)))))).((((.....)))).. ( -41.20)
>DroEre_CAF1 105219 118 + 1
ACGCUGCCAAGUUUCCUCGCUCUGCAGGUGCAGAUCAUAUCCUUUAUCCUGGAGGUCAUGAAGGUGAACAUUCGAGUUCGCCAGACCAAGCUGCAGCUGCAGAUCCUGGCCAGAGAAU
.(.((((((.((......))(((((((.(((((.((((..(((((.....)))))..)))).(((((((......)))))))........))))).)))))))...))).))).)... ( -45.00)
>DroYak_CAF1 94992 118 + 1
AUGCUGCCCAGUAUCCUGGCGCUGCAGUUGCAGAUAAUAUCCUUUAUUCUGGAGGUGAUGAAGGUGAACAUACGGGUGCGCCACACCAAGCUGCAGCUGCAGAUCCUGGCCAGGGAAU
.((((....))))(((((((.((((((((((((......(((........)))((((.....((((.((......)).)))).))))...))))))))))))......)))))))... ( -48.10)
>DroPer_CAF1 112966 118 + 1
ACACUGCCCAGCUUCCUGGGCCUGCAGUUCCAGAUCAUAGCCUUCAUCGCACAGGUCAUGUAUGUGAACCUUCGCGUUCGCCUGGCCCGCCGCCAGCUGCAGGCUCUGGCCCGGGAGC
...((.(((.(((....((((((((((............((......(((..(((((((....))).))))..)))...))(((((.....))))))))))))))).)))..))))). ( -44.00)
>consensus
ACGCUGCCCAGUUUCCUGGCCCUGCAGUUGCAGAUCAUAUCCUUUAUCCUGGAGGUCAUGAAGGUGAACAUACGGGUUCGCCAGACCAAGCUGCAGCUGCAGAUCCUGGCCAGGGAAU
..........(((((((((((((((((.(((((.((((..(((((.....)))))..)))).(((((((......)))))))........))))).))))))).....)))))))))) (-33.65 = -37.18 +   3.53)

alignment

Postscript

secondary structure

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dotplot

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Window 1

Location 2,671,369 – 2,671,487
Length 118
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.73
Mean single sequence MFE -42.87
Consensus MFE -27.67
Energy contribution -29.53
Covariance contribution 1.87
Combinations/Pair 1.16
Mean z-score -1.52
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.588240
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2671369 118 - 22407834
AUUCCCUGGCCAGAAUCAGCAGCUGCAGCUUGGUCUGGCGAACCCUUAUGUUCACCUUCAUGACCUCCAGGAUAAAGGAUAUAAUCUGCACCUGCAGAGCCAGAAAACUGGGCAGCGU
.....(((.((((..(((..(((....))))))((((((((((......)))).((((.((..((....)))).))))......(((((....)))))))))))...)))).)))... ( -37.10)
>DroPse_CAF1 116226 118 - 1
GCUCCCGGGCCAGAGCCUGCAGCUGGCGGCGGGCCAGGCGAACGCGAAGGUUCACAUACAUGACCUGUGCGAUGAAGGCUAUGAUCUGGAACUGCAGGCCCAGGAAGCUGGGCAGUGU
((..((((..((.(((((.((.(((((.....))))).....((((.((((.((......)))))).)))).)).))))).))..))))....))..((((((....))))))..... ( -51.20)
>DroSec_CAF1 91208 118 - 1
AUUCCCUGGCCAGGAUCUGCAGCUGCAGCUUGGUCUGGCGAACCUUUAUGUUCACCUUCAUGACUUCCAGGAUAAAGGAUAUAAUCUGCAUCUGCAGUGCCAGUAAACUGGGCAGCGU
.....(((.((.((..((((((.(((((.((((((.((.((((......)))).)).....))).(((........)))..))).))))).))))))..))((....)))).)))... ( -37.50)
>DroEre_CAF1 105219 118 - 1
AUUCUCUGGCCAGGAUCUGCAGCUGCAGCUUGGUCUGGCGAACUCGAAUGUUCACCUUCAUGACCUCCAGGAUAAAGGAUAUGAUCUGCACCUGCAGAGCGAGGAAACUUGGCAGCGU
........(((....(((((((.(((((.((((((.((.((((......)))).)).....))))(((........)))...)).))))).)))))))..(((....))))))..... ( -42.70)
>DroYak_CAF1 94992 118 - 1
AUUCCCUGGCCAGGAUCUGCAGCUGCAGCUUGGUGUGGCGCACCCGUAUGUUCACCUUCAUCACCUCCAGAAUAAAGGAUAUUAUCUGCAACUGCAGCGCCAGGAUACUGGGCAGCAU
.....(((.((((.((((...(((((((...((((.((.(.((......)).).)).....))))(((........)))............)))))))....)))).)))).)))... ( -37.50)
>DroPer_CAF1 112966 118 - 1
GCUCCCGGGCCAGAGCCUGCAGCUGGCGGCGGGCCAGGCGAACGCGAAGGUUCACAUACAUGACCUGUGCGAUGAAGGCUAUGAUCUGGAACUGCAGGCCCAGGAAGCUGGGCAGUGU
((..((((..((.(((((.((.(((((.....))))).....((((.((((.((......)))))).)))).)).))))).))..))))....))..((((((....))))))..... ( -51.20)
>consensus
AUUCCCUGGCCAGAAUCUGCAGCUGCAGCUUGGUCUGGCGAACCCGAAUGUUCACCUUCAUGACCUCCAGGAUAAAGGAUAUGAUCUGCAACUGCAGAGCCAGGAAACUGGGCAGCGU
........(((....(((((((.(((((...((((.((.((((......)))).)).....))))(((........)))......))))).)))))))..(((....))))))..... (-27.67 = -29.53 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:03 2006