Locus 930

Sequence ID 2L_DroMel_CAF1
Location 2,670,036 – 2,670,156
Length 120
Max. P 0.500000
window1499

overview

Window 9

Location 2,670,036 – 2,670,156
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.83
Mean single sequence MFE -47.42
Consensus MFE -24.03
Energy contribution -22.78
Covariance contribution -1.24
Combinations/Pair 1.44
Mean z-score -2.00
Structure conservation index 0.51
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2670036 120 - 22407834
GUCUUUGCAGUUGCAACUCCGUCUGGACUCGCAGAUCCUCCAGCUGGCUGUGGGUCUUCUGCUUAAGGACACUCUCCAGCAGGAGCGCAAAUCCCAGCACGGAGUUUCCCACGAACAGCA
.....(((.((((.((((((((((((((((((((..((.......))))))))))((((((((...(((.....)))))))))))........)))).)))))))).).....))).))) ( -42.20)
>DroPse_CAF1 115033 120 - 1
GGCGCUGCAGCUGGAGCUGCGACUGGAAGCGCAGGUCCUCCAGCUGUCUGUGGGUCUUCUGCUUCAGCACGCUCUCCAGAAGAAGCAGCAGACCCAAAACGGUGCUGCCCAUGAAGAGCA
(((((((((((((((((((((........)))))...)))))))))....(((((((.(((((((..(..........)..))))))).)))))))...)))))))((.(.....).)). ( -55.40)
>DroSim_CAF1 91030 120 - 1
GUCUUUGCAGCUGCAACUCCGUCUGGACUCGCAGAUCCUCCAGCUGGCUGUGGGUCUUCUGCUUCAGGACACUCUCCAGCAGGAGCGCAAAUCCCAGCACGGAGUUUCCCACGAACAGCA
.........((((.((((((((((((((((((((..((.......))))))))))((((((((...(((.....)))))))))))........)))).))))))))((....)).)))). ( -44.50)
>DroYak_CAF1 93656 120 - 1
GUCUCUGCAGCUGCAACUCCGUCUGAACACGCAGAUCCUCCAGCUGGCUGUGGGUCUUUUGCUUAAGGACACUCUCCAGCAGGAGCGCAAGUCCCAGCACGGAGUUGCCCACGAACAGCG
.........((((((((((((((((.....(((((.((..(((....)))..))...)))))....((((.(.((((....)))).)...))))))).))))))))))........))). ( -45.50)
>DroAna_CAF1 147799 120 - 1
AACGUUGGAGCUGCAGUUCCGACUGGAAGCGCAGGGUCUCCAACUGGCCGUGGGCCGCCUGCUGCAGGACACUUUCCAGGAGUAGCAGCAGUCCUAGCACAGACUUUCCCGUGAAUAGUA
...(((((..((((.(((.(..((((((((.((.((((.......)))).)).)).(((((...)))).)...))))))..).))).))))..)))))....((((((....))).))). ( -43.60)
>DroPer_CAF1 111773 120 - 1
GGCGCUGCAGCUGGAGCUGCGACUGGAAGCGCAGGUCUUCCAGCUGUCUGUGGGUCUUCUGCUUCAGCACGCUCUCCAGGAGGAGCAGCAGACCCAAAAUGGUGCUGCCCAUGAAGAGCA
(((((((((((((((((((((........)))))...))))))))))...(((((((..(((....))).(((((((....)))).))))))))))....))))))((.(.....).)). ( -53.30)
>consensus
GUCGCUGCAGCUGCAACUCCGACUGGAAGCGCAGAUCCUCCAGCUGGCUGUGGGUCUUCUGCUUCAGGACACUCUCCAGCAGGAGCACAAGUCCCAGCACGGAGUUGCCCACGAACAGCA
.........((((.....(((.(((((...........))))).))).((((((.....((((((.(((.....)))....)))))).(((..((.....))..)))))))))..)))). (-24.03 = -22.78 +  -1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:01 2006