Locus 93

Sequence ID 2L_DroMel_CAF1
Location 309,464 – 309,570
Length 106
Max. P 0.776820
window138

overview

Window 8

Location 309,464 – 309,570
Length 106
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 89.75
Mean single sequence MFE -30.50
Consensus MFE -24.08
Energy contribution -25.00
Covariance contribution 0.92
Combinations/Pair 1.08
Mean z-score -1.69
Structure conservation index 0.79
SVM decision value 0.55
SVM RNA-class probability 0.776820
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 309464 106 - 22407834
GUACGUGAGUACAGCGUCAAAUCGUCCGGUCUCGGAACGCGCGCAUGUGCCACAAAA---AAAUAGAGGAACAAAA---ACCGUCGAGAAGAGGAA-----GCCCAGAUAUA--UGGGU
((((....))))............(((..((((((...((((....)))).......---.......((.......---.)).))))))...))).-----(((((......--))))) ( -30.40)
>DroSec_CAF1 13724 106 - 1
GUACGUGAGUACAGCGUCAAAUCGUCCGGUCUCGGAACGCGCGCAUGUGCCACAAAA---AAAUAGAGGAACAAAA---ACCGCCGAGAAGGGGAA-----GCCCAGAUAUA--UGGGU
((((....)))).(((......)))((..((((((...((((....)))).......---.......((.......---.)).))))))..))...-----(((((......--))))) ( -32.70)
>DroSim_CAF1 15471 106 - 1
GUACGUGAGUACAGCGUCAAAUCGUCCGGUCUCGGAACGCGCGCAUGUGCCACAAAA---AAAUAGAGGAACAAAA---ACCGCCGAGAAGAGGAA-----GCCCAGAUAUA--UGGGU
((((....))))............(((..((((((...((((....)))).......---.......((.......---.)).))))))...))).-----(((((......--))))) ( -33.00)
>DroEre_CAF1 14351 106 - 1
GUACGUGAGUACAGCGUCAAAUCGUCCGGACUCGGAACGCGCGCAUGUGCCACAAAA---AAAUAGAGGAACAAAA---ACCGCCGAGAAGAGGAA-----GCCCAGAUACA--UGGGU
((((....))))............(((...(((((...((((....)))).......---.......((.......---.)).)))))....))).-----(((((......--))))) ( -29.80)
>DroAna_CAF1 22331 118 - 1
GUACGUGAGUACAGCGUCAAAUUGUCCGGACUCG-AACGCGCGCAUGUGCCACAAAAAAAAAAUCGAGGAACAAAAGCAACAAUCGAAAACAGGAAGGGACGCCUAGAUACCACCGGGU
((((....)))).(((((......(((....(((-(....((...(((.((................)).)))...)).....)))).....)))...)))))......(((....))) ( -26.59)
>consensus
GUACGUGAGUACAGCGUCAAAUCGUCCGGUCUCGGAACGCGCGCAUGUGCCACAAAA___AAAUAGAGGAACAAAA___ACCGCCGAGAAGAGGAA_____GCCCAGAUAUA__UGGGU
((((....))))............(((..((((((...((((....)))).................((...........)).))))))...)))......(((((........))))) (-24.08 = -25.00 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:32 2006