Locus 922

Sequence ID 2L_DroMel_CAF1
Location 2,650,099 – 2,650,193
Length 94
Max. P 0.808564
window1484

overview

Window 4

Location 2,650,099 – 2,650,193
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 77.63
Mean single sequence MFE -24.12
Consensus MFE -11.10
Energy contribution -11.61
Covariance contribution 0.50
Combinations/Pair 1.33
Mean z-score -2.29
Structure conservation index 0.46
SVM decision value 0.64
SVM RNA-class probability 0.808564
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2650099 94 + 22407834
UUUUCGGGCAGCUGUUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGACAUUCCUUGCCCCUUUUUAAGCCAUAUUUUUGGUGUUCACUUUCCU-----
.....((((((..(..(((((..(((((((....))).))))...)))))..).))))))........((((......))))............----- ( -27.30)
>DroSec_CAF1 70966 94 + 1
UUUUUGGGCAGCUGUUUGUUGGUUCCCUUGUAAACAGUGGGAUAAUGGCAUUCCUUCCCCCUUUUUAUACCAUAUUUUUGGUGUUCACUUUCCU-----
.....(((..((((((((..((....))..))))))))(((((......)))))....))).....((((((......))))))..........----- ( -21.10)
>DroSim_CAF1 72009 94 + 1
UUUUCGGGCAGCUGUUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGGCAUUCCUUCCCCCUUUUUAUACAAUAUUUUUGGUGUUCACUUUCCU-----
.....(((((((((((((..((....))..))))))))((((....((....)).))))......................)))))........----- ( -20.20)
>DroEre_CAF1 79362 94 + 1
UUUUCCGGCAACUGAUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGGCAUUCCUUCCCCUUUUUAAAGCCAUAUCUUUGGGGAUCAGUGUCCU-----
....(((((((....))))))).(((((((....))).))))....((((((...(((((...................)))))..))))))..----- ( -28.21)
>DroYak_CAF1 74384 94 + 1
UUUUCGGGCAGCUGAUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGGCACUCCUUGCCCCUUUUCAAGCCAUAUUUUUGGGCUUCACCAUCCC-----
.....((((((..((.(((((..(((((((....))).))))...))))).)).))))))......(((((.........))))).........----- ( -28.00)
>DroAna_CAF1 113794 95 + 1
-UUUCCCGAU-CCUUUUUCCAGUU--CCUAUAAACGGUGGGAUACCUGGAUUCUCUUGCCUUUUUACAAAAAUACUGAUGGGAUCCAUUUUCGUCGUGU
-.........-......(((((.(--(((((.....))))))...))))).....................((((.((((..(.....)..)))))))) ( -19.90)
>consensus
UUUUCGGGCAGCUGUUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGGCAUUCCUUCCCCCUUUUUAAACCAUAUUUUUGGGGUUCACUUUCCU_____
.....(((........(((((..(((((((....))).))))...)))))........)))...................................... (-11.10 = -11.61 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:47 2006