Locus 92

Sequence ID 2L_DroMel_CAF1
Location 308,319 – 308,426
Length 107
Max. P 0.659545
window137

overview

Window 7

Location 308,319 – 308,426
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.10
Mean single sequence MFE -18.96
Consensus MFE -13.52
Energy contribution -14.32
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.71
SVM decision value 0.26
SVM RNA-class probability 0.659545
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 308319 107 + 22407834
UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGCAG-------------CACCACCACCCACAACAACAAUGCCAGCAGCACCACCCACUCACAGUGGGC
(((((......)))))(((((((......)..((((................))))-------------.....................))))))........(((((.....))))). ( -17.59)
>DroSec_CAF1 12638 107 + 1
UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGAG-------------CACCACCACCCACAACAACAAUGCCAGCAGCACCACCCACUCACAGUGGGC
(((((......)))))(((((((((...((....))..)))...........((..-------------..)).................))))))........(((((.....))))). ( -19.00)
>DroSim_CAF1 14375 107 + 1
UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGAG-------------CACCACCACCCACAACAACAAUGCCAGCAGCACCACCCACUCACAGUGGGC
(((((......)))))(((((((((...((....))..)))...........((..-------------..)).................))))))........(((((.....))))). ( -19.00)
>DroEre_CAF1 13182 120 + 1
UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGUGAACCCACUCCCUCCACCACCACCCACAGCAACAAUGGCAGCAACACCACCCACGCACAGUGGGC
(((((......)))))...((((.........)))).....((((((.....((((.............))))..........((.....(((........))).....))..)))))). ( -19.92)
>DroYak_CAF1 13476 117 + 1
UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGUGAAUCCAC---CACCACCACCACCCACAACAACAAUGGCAGCCACACCACCCCCGCACAGUGGGC
(((((......)))))...((((.........)))).....((((((.....((((....)))---).......................(((........))).........)))))). ( -19.30)
>consensus
UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGAG_____________CACCACCACCCACAACAACAAUGCCAGCAGCACCACCCACUCACAGUGGGC
(((((......)))))(((((((((...((....))..))).((........))....................................))))))........(((((.....))))). (-13.52 = -14.32 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:31 2006