Locus 915

Sequence ID 2L_DroMel_CAF1
Location 2,636,890 – 2,636,993
Length 103
Max. P 0.652840
window1472

overview

Window 2

Location 2,636,890 – 2,636,993
Length 103
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 73.72
Mean single sequence MFE -16.79
Consensus MFE -2.48
Energy contribution -2.28
Covariance contribution -0.20
Combinations/Pair 1.62
Mean z-score -1.55
Structure conservation index 0.15
SVM decision value 0.25
SVM RNA-class probability 0.652840
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2636890 103 - 22407834
GAUAGAGAUGACAAAAAUUCUGGAUGUCCGACUUCACUUUUGUGGCAUUCAAAGCUUUCAAACCCUUUUUAAUAAU-AUAAUACAAAGCUAUGUUUUUCUACCC
..((((((.((((.......(((((((((((........))).)))))))).((((((..................-.......)))))).))))))))))... ( -18.21)
>DroSec_CAF1 57561 81 - 1
GAUAGAGAUGACAAAAAUUCUGAAUGUCCGAAUUCAAUUAUGUGGUAUUCAAACCUUUCAAACCCUUUGU-----------------------UUUUCCUACCC
..(((..(.((((((.....(((((......)))))....((.(((......)))...)).....)))))-----------------------).)..)))... ( -11.10)
>DroSim_CAF1 58640 81 - 1
GAUAGAGAUGACAAAAAUUCUGAGUGUCCAAAUUCACUUAUGUGGUAUUCAAACCAUUCAAACCCUUUGU-----------------------UUUUUCUACCC
..((((((.((((((.....((((((........)))))).(((((......)))))........)))))-----------------------).))))))... ( -18.20)
>DroEre_CAF1 65917 103 - 1
GAUAGAGAUGACAAACAUGCAGGAUUUUCAACUUCACUUGUGUGGUAUUCGAACCUUUCAAACCCUUUUUAACAAA-CGAAUACAAAUUAAUGUUUUUCUACCC
..((((((.((((..((((((((.............))))))))(((((((.........................-))))))).......))))))))))... ( -18.63)
>DroYak_CAF1 59969 104 - 1
GAUAGAGAUGACAAAAAUAUAGGAUUUCCCACUUCACUUUUGCGGUAUUCCAACCUUUCAAACCCUUUUUAACAAAAGGGAUGCAAAUUAAUGUUCUGCAACCC
(.(((((..............((.....))........((((((((......))).......(((((((....)))))))..)))))......))))))..... ( -17.80)
>consensus
GAUAGAGAUGACAAAAAUUCUGGAUGUCCAACUUCACUUAUGUGGUAUUCAAACCUUUCAAACCCUUUUUAA_AA_____AU_CAAA___AUGUUUUUCUACCC
.....................(((((.(((............))))))))...................................................... ( -2.48 =  -2.28 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:35 2006