Locus 914

Sequence ID 2L_DroMel_CAF1
Location 2,636,138 – 2,636,228
Length 90
Max. P 0.947757
window1471

overview

Window 1

Location 2,636,138 – 2,636,228
Length 90
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.10
Mean single sequence MFE -25.52
Consensus MFE -19.52
Energy contribution -19.33
Covariance contribution -0.19
Combinations/Pair 1.17
Mean z-score -1.57
Structure conservation index 0.77
SVM decision value 1.38
SVM RNA-class probability 0.947757
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2636138 90 + 22407834
------C------------------------CAACUCGGAAUCCUGACAAUUGAAGUGGCAUUUCGCACUCCGGCGUCAUCUGUCUGCCAAGUGCCUUUUGGAGUUCGCUCACGUCACAA
------.------------------------(((.((((....))))...)))..(((((.....(((((..((((.(....).).))).)))))......(((....)))..))))).. ( -23.10)
>DroPse_CAF1 78830 115 + 1
GUGCUCCUCCUCCUCCUCUGACUCU-----CCAUCUCAAACUCUUCACAAUUCAAGUGGCACUUCACACUCGGGCGUCAUCUGUCUGCCAAGUGCCCCUUGGAGUUUGCUCACGUCACAA
..................((((...-----......................((((.(((((((..((..((((.....))))..))..))))))).))))(((....)))..))))... ( -25.40)
>DroEre_CAF1 65186 90 + 1
------C------------------------CAACUCGGAAUCCUGACAAUUGAAGUGGCAUUUCGCACUCCGGCGUCAUCUGUCUGCCAAGUGCCUUUUGGAGUUCGCUCACGUCACAA
------.------------------------(((.((((....))))...)))..(((((.....(((((..((((.(....).).))).)))))......(((....)))..))))).. ( -23.10)
>DroYak_CAF1 59191 111 + 1
------CCC---AACUUCCAACUCCCAACUUCAGCUCGCAAUCCUGACAAUUGAAGUGGCAUUUCGCACUCCGGCGUCAUCUGUCUGCCAAGUGCCUUUUGGAGUUCGCUCACGUCACAA
------...---.......((((((..(((((((....((....))....)))))))(((((((.(((....((((.....))))))).)))))))....)))))).............. ( -26.20)
>DroAna_CAF1 78556 90 + 1
------C------------------------AGACUCCGACUCCUGACAAUUCGAGUGGCAUUUCGCACUCCGGCAUCAUCUGUCUGCCAAGUGCCUUUCGGAGUUUGCUCACGUCACAA
------(------------------------((((((((((((..........))))(((((((.(((....((((.....))))))).)))))))...)))))))))............ ( -29.10)
>DroPer_CAF1 75701 112 + 1
GUGCUCCUC---CUCUGCUGACUCU-----CCAUCUCAAACUCUUCACAAUUCAAGUGGCACUUCACACUCGGGCGUCAUCUGUCUGCCAAGUGCCCCUUGGAGUUUGCUCACGUCACAA
.........---...((.((((...-----......................((((.(((((((..((..((((.....))))..))..))))))).))))(((....)))..)))))). ( -26.20)
>consensus
______C________________________CAACUCGGAAUCCUGACAAUUCAAGUGGCAUUUCGCACUCCGGCGUCAUCUGUCUGCCAAGUGCCUUUUGGAGUUCGCUCACGUCACAA
............................................((((.....(((.(((((((.(((....((((.....))))))).))))))).))).(((....)))..))))... (-19.52 = -19.33 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:34 2006