Locus 913

Sequence ID 2L_DroMel_CAF1
Location 2,633,214 – 2,633,304
Length 90
Max. P 0.589919
window1470

overview

Window 0

Location 2,633,214 – 2,633,304
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 82.09
Mean single sequence MFE -13.73
Consensus MFE -8.16
Energy contribution -8.38
Covariance contribution 0.22
Combinations/Pair 1.15
Mean z-score -2.09
Structure conservation index 0.59
SVM decision value 0.11
SVM RNA-class probability 0.589919
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2633214 90 + 22407834
AAAUAAAAGUUGAAAUUGUCGCGUAGAAAUU-CUAAGAAUAAAGCGGCGAAUUUUCCACAAAGCCAAAAAAAA---AAAAAAAUAGGGCGGAAG
........((.(((((((((((.(((.....-)))........)))))))..)))).))...(((........---..........)))..... ( -14.77)
>DroSec_CAF1 53952 83 + 1
AAAUAAAAGUUGAAAUUGUCGCGUAGAAAUU-CUAAGAAUAAAGCGGCGAAUUUUCCACAAAGCCAAAA----------AAAUUAGGGCGGAAG
........((.(((((((((((.(((.....-)))........)))))))..)))).))...(((....----------.......)))..... ( -15.30)
>DroSim_CAF1 54023 92 + 1
AAAUAAAAGUUGAAAUUGUCGCGUAGAAAUU-CUAAGAAUA-AGCGGCGAAUUUUCCACAAAGCCAAAAAAAAAAAAAAAAAAUAGGGCGGAAG
........((.(((((((((((.(((.....-)))......-.)))))))..)))).))...(((.....................)))..... ( -14.70)
>DroEre_CAF1 62272 79 + 1
AAAUAAAAGUUGAAAUUGUCGCAUAGAAAUU-CUAAGAAUAAAGCGGCGAAUUUUCCACAAAGCCAA--------------AAUAGGGCGGAAG
........((.(((((((((((.........-...........)))))))..)))).))...(((..--------------.....)))..... ( -14.25)
>DroYak_CAF1 56297 84 + 1
AAAUAAAAGUUGAAAUUGUCGCAUAGAAAUU-CUAAGAAUAAAGCGGCGAAUUUUCCACAAAUUUAAAAAAA---------AAAAGGGCGGAAG
...............(((((((.........-...........)))))))...((((.(...(((.......---------.)))..).)))). ( -10.75)
>DroAna_CAF1 75285 75 + 1
AAAUAAAAGUUGAAAUUGUCGCGCACAUAUUCCUAAGAAUAAAACAAGGAAUUUUCCGCAAAACCCA-------------------GCCGGGAA
....................(((.....((((((............))))))....)))....(((.-------------------...))).. ( -12.60)
>consensus
AAAUAAAAGUUGAAAUUGUCGCGUAGAAAUU_CUAAGAAUAAAGCGGCGAAUUUUCCACAAAGCCAAAA____________AAUAGGGCGGAAG
........((.(((((((((((.....................)))))))..)))).))................................... ( -8.16 =  -8.38 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:33 2006