Locus 910

Sequence ID 2L_DroMel_CAF1
Location 2,613,663 – 2,613,758
Length 95
Max. P 0.997691
window1465

overview

Window 5

Location 2,613,663 – 2,613,758
Length 95
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 69.59
Mean single sequence MFE -20.15
Consensus MFE -11.39
Energy contribution -12.77
Covariance contribution 1.37
Combinations/Pair 1.05
Mean z-score -2.37
Structure conservation index 0.57
SVM decision value 2.91
SVM RNA-class probability 0.997691
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2613663 95 - 22407834
AAAAUCAAACAGCUU-----------------------AAA-AAAUGCAGUACAGAAUAUUGGAUGGCUCAUACAGAUCUGUCACAAUGAAAUACCGCCAGUUUAAUUCGCAGCAUUUU
...............-----------------------..(-((((((.((...(((((((((.(((.(((((((....)))....))))....))))))))...)))))).))))))) ( -14.70)
>DroSec_CAF1 34404 79 - 1
AAAAUCAAACAGCUU-----------------------AAAAAAAUGCAGUACCGAAUAUUGGAUGGCUCACACAGAU-----------------CGCCAUUUUUAUUCGCUGCACUUU
...............-----------------------.......(((((...((((((..(((((((((.....)).-----------------.))))))).))))))))))).... ( -18.90)
>DroSim_CAF1 34498 79 - 1
AAAAUCAAACAGCUU-----------------------AAAAAAAUGCAGUACCGAAUAUUGGAUGGCUCACACGGAU-----------------CGCCAUUUUUAUUCGCUGCAUUUU
...............-----------------------...(((((((((...((((((..(((((((((.....)).-----------------.))))))).))))))))))))))) ( -22.10)
>DroYak_CAF1 36033 119 - 1
GAAAUCAAACAGUUGCGUGCAUGUCCUUUUUAUGCGCAAAAAAAAUGCAGUACAAAAUAUUGGAUGCUUCACACAGAGCUGUUACUAUGAAAUAUCACCAUUUUAAUUCGCAGCAUUUU
...........((((((((((((.......)))))))....(((((((((((.....)))))((((.((((.(((....))).....)))).))))..)))))).....)))))..... ( -24.90)
>consensus
AAAAUCAAACAGCUU_______________________AAAAAAAUGCAGUACAGAAUAUUGGAUGGCUCACACAGAU_________________CGCCAUUUUAAUUCGCAGCAUUUU
.........................................((((((((((...((((...(((((((............................)))))))..)))))))))))))) (-11.39 = -12.77 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:29 2006