| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,612,473 – 2,612,587 |
| Length | 114 |
| Max. P | 0.568659 |
| Location | 2,612,473 – 2,612,587 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 93.53 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -21.43 |
| Energy contribution | -22.43 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2612473 114 + 22407834 UUCCGUAAAAAUAAAACCAGAACAGGCAAUAUUUUUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGAAUCAUGUUUUACACCGAUUUGUUGAAUUGAAAAAAAUCGCCA .((((((((((.....((......))......))))))))))......((...((((..(((((((.......)))))))..))))((((((.((.......)).)))))))). ( -26.30) >DroSec_CAF1 33198 110 + 1 UUCCGUAAAAAUAAAACCAGAACAGGUAAUAUU-UUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGGAUCAUGUUGUACACCGAUUUGUUGA-UUGAA--AAAUCGCCA ..(((((((((((..(((......)))..))))-)))))))((((..(((....(((..(((((((.......)))))))..))))))..)))).((-((...--.)))).... ( -31.30) >DroSim_CAF1 33280 112 + 1 UACCGCAAAAAUAAAACCAAAACAGUCAAUAUUUUUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGGAUCAUGUUUUACACCGAUUUGUUGA-UUGAA-AAAAUCGCCA ......................(((((((((..((.....((....)).....((((..(((((((.......)))))))..)))).))..))))))-)))..-.......... ( -23.50) >consensus UUCCGUAAAAAUAAAACCAGAACAGGCAAUAUUUUUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGGAUCAUGUUUUACACCGAUUUGUUGA_UUGAA_AAAAUCGCCA ..(((((((((.....((......))......))))))))).......((...((((..(((((((.......)))))))..))))((((((.((.....))...)))))))). (-21.43 = -22.43 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:26 2006