Locus 907

Sequence ID 2L_DroMel_CAF1
Location 2,604,539 – 2,604,639
Length 100
Max. P 0.770220
window1461

overview

Window 1

Location 2,604,539 – 2,604,639
Length 100
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 89.21
Mean single sequence MFE -28.23
Consensus MFE -22.26
Energy contribution -22.77
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.79
SVM decision value 0.53
SVM RNA-class probability 0.770220
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2604539 100 + 22407834
UUC-------UCCCUGCCGAGCGGUAAUUUACCGAAAGGACCGAACGGCCGAAAUUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAGAAGCACUCGUACAAA
...-------...(.((((..((((......((....))))))..)))).)............(((((((((........))).(((......))).)))))).... ( -27.30)
>DroSec_CAF1 25341 100 + 1
UUC-------UGCCUGCCGAGCGGUAAUUUACCGAAAGGACCAAACGGCCGAAACUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAGAAGUACUCGUACAAA
(((-------((((.((.(((((((..(((.((....))...)))..))))...)))........((((.((.....)))))).)).)))))))(((....)))... ( -31.30)
>DroSim_CAF1 25413 100 + 1
UUC-------UCCCUGCCGAGCGGUAAUUUACCGAAAGGACCAAACGGCCGAAACUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAGAAGUACUCGUACAAA
...-------...(((((.((((((..(((.((....))...)))..)))...............((((.((.....)))))).))))))))..(((....)))... ( -27.10)
>DroEre_CAF1 33370 98 + 1
UUCACAGGACUCUCUGGCGAGCGGUAAUUUACCGAAAGGACC---CGGCCGAAACUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAUAAG------UACAAA
....((((....))))..(((((((......((....))...---..))))...))).((((((((.(((..............))).)))))))------)..... ( -27.24)
>consensus
UUC_______UCCCUGCCGAGCGGUAAUUUACCGAAAGGACCAAACGGCCGAAACUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAGAAGUACUCGUACAAA
.............(((((.((((((......((....))........)))...............((((.((.....)))))).))))))))............... (-22.26 = -22.77 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:25 2006