Locus 903

Sequence ID 2L_DroMel_CAF1
Location 2,584,463 – 2,584,562
Length 99
Max. P 0.865317
window1456

overview

Window 6

Location 2,584,463 – 2,584,562
Length 99
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 81.70
Mean single sequence MFE -29.43
Consensus MFE -18.92
Energy contribution -20.32
Covariance contribution 1.39
Combinations/Pair 1.21
Mean z-score -2.63
Structure conservation index 0.64
SVM decision value 0.85
SVM RNA-class probability 0.865317
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2584463 99 - 22407834
CAAUCACAGAAUGGCUC-CCAUUGCCAGAUAAGAAUAGUUAAUCUGCGGUUUUCCAAGUGUUUCCUCGCUGCAAACGCUUGGGAGCCACCUUAUCAGGUC
..(((......((((..-.....))))((((((....((......))(((((.((((((((((.(.....).)))))))))))))))..)))))).))). ( -30.90)
>DroSec_CAF1 5131 100 - 1
CAAUCACAGAAUGGCUCCCCAUUGCCAGAUAAGAAUAGUUAAUCUGCGGUUUUCCAAGUGUUUCCUUGCUGCAAACGCUUGGAAGCUUCCUUAUCAGGUC
..(((......((((........))))((((((....((......))(((((.((((((((((.(.....).)))))))))))))))..)))))).))). ( -28.40)
>DroSim_CAF1 5152 99 - 1
CAAUCACAGAAUGGCUC-CCAUUGCCAGAUAAGAAUAGUUAAUCUGCGGUUUUCCAAGUGUUUCCUUGCUGCAAACGCUUGGAAGCUUCCUUAUCAGGUC
..(((......((((..-.....))))((((((....((......))(((((.((((((((((.(.....).)))))))))))))))..)))))).))). ( -28.10)
>DroEre_CAF1 9892 95 - 1
CAG----AGAAUUGCUU-CCAUUGACAGAUAACAAUAGUUAAUCUGGGGGUUUCCAAGUGUUUCCUUGCUGCAAACGCUUGGGAGCUCCCUUAUCAGGUC
...----..........-.....((((((((((....))).))))((((((((((((((((((.(.....).)))))))))))))))))).......))) ( -33.20)
>DroYak_CAF1 5263 99 - 1
CAAUCUCGAAAUGGCUC-CCAUUGCCAGAUAACAAUAGUUAAUCUGCGGGUUCCCAAGUGUUUCCUUGCUGCAAACGCUUGGGAGCUGCCUUAUCAGGUC
..((((.((...(((..-....(((.(((((((....))).)))))))(((((((((((((((.(.....).))))))))))))))))))...)))))). ( -35.70)
>DroAna_CAF1 6753 94 - 1
UGA----AGAACCCCG--CCCGUACCAGAUAACCACAGCUAAUCUGCUGACUUAAAAGUAUUUCCUAGUUGCACAUGCUUAAGAAGUUCUUUAUCUGGGC
...----.........--......((((((((...((((......))))((((..((((((...(.....)...))))))...))))...)))))))).. ( -20.30)
>consensus
CAAUCACAGAAUGGCUC_CCAUUGCCAGAUAACAAUAGUUAAUCUGCGGUUUUCCAAGUGUUUCCUUGCUGCAAACGCUUGGGAGCUUCCUUAUCAGGUC
...........((((........))))(((((...(((.....))).((((((((((((((((.(.....).)))))))))))))..))))))))..... (-18.92 = -20.32 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:20 2006