Locus 900

Sequence ID 2L_DroMel_CAF1
Location 2,576,279 – 2,576,399
Length 120
Max. P 0.540362
window1453

overview

Window 3

Location 2,576,279 – 2,576,399
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.22
Mean single sequence MFE -41.47
Consensus MFE -24.30
Energy contribution -24.94
Covariance contribution 0.64
Combinations/Pair 1.29
Mean z-score -1.83
Structure conservation index 0.59
SVM decision value 0.01
SVM RNA-class probability 0.540362
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2576279 120 - 22407834
GGUCCGCUACUUGGAGGCCAAACUGCAGCAGCACAAGGAUCUGCUAUCCCAGAUUCAUGCCACCUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGCAGAAAGUAGACCACCCACGCC
((((..((....(((((......(((....)))...(((((((......)))))))......)))))((((((((((.....)))))).......))))....))..))))......... ( -41.61)
>DroPse_CAF1 2643 117 - 1
GGUGCGCUACCUGGAGAACAAGCUGAAGGAGCACACGGAUCUGCUCUCCCAGAUCCAUGCCACCUCGGCGCGCAUGCAACAGUCGU---UGGGAGUGGCGGAUGCUGCGUCCCCAACGCC
.((((((....((.....)).(((((.(..(((...(((((((......))))))).)))..).)))))))))))......(.(((---((((.(..((....))..)...)))))))). ( -47.60)
>DroSec_CAF1 2697 120 - 1
GGUCCGCUUCUUGGAGGCCAAACUGCAGCAGCACAAGGAUCUGCUGUCCCAGAUUCAUGCCACAUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGUAGAAAGUAGGCCACCCACGCC
((((..(((.((((...)))).(((((((((.....(((((((......)))))))(((((.(((((....))))).....))))).....))))).)))).)))..))))......... ( -40.50)
>DroSim_CAF1 2707 120 - 1
GGUCCGCUUCUUGGAGGCCAAACUGCAGCAGCACACGGAUCUGCUGUCCCAGAUUCAUGCCACAUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGUAGAAAGUAGGCCACCCACGCC
((((..(((.((((...)))).(((((((((.....(((((((......)))))))(((((.(((((....))))).....))))).....))))).)))).)))..))))......... ( -40.60)
>DroYak_CAF1 2861 120 - 1
GGUACGCUACUUGGAGGCCAAAUUACAGCAGCACACGGAUCUGCUCUCCCAGAUUCAUGCCACCUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGCAGAAAGUGGACCACCAACGCC
(((...((((((((((((.........)).(((...(((((((......))))))).)))...))))((((((((((.....)))))).......))))...))))))...)))...... ( -38.71)
>DroAna_CAF1 3559 120 - 1
GGUACGCUACUUGGAGGCUAAACUACAGCAGCACACAGACCUAUUGUCACAGAUUCAUGCAACAUCCGCCAGGAUGCAGCAUGGAUCCUCGUUGAUAACGGACACGUCGCCUCCCACACC
............((((((.......((((........(((.....)))...(((((((((..(((((....)))))..)))))))))...))))...(((....))).))))))...... ( -39.80)
>consensus
GGUCCGCUACUUGGAGGCCAAACUGCAGCAGCACACGGAUCUGCUGUCCCAGAUUCAUGCCACAUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGCAGAAAGUAGGCCACCCACGCC
((((.(((..(((.((......)).))).)))....(((((((......))))))).(((((........(((((((.....)))))))......))))).......))))......... (-24.30 = -24.94 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:17 2006