| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,574,398 – 2,574,513 |
| Length | 115 |
| Max. P | 0.726266 |
| Location | 2,574,398 – 2,574,513 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.10 |
| Mean single sequence MFE | -36.83 |
| Consensus MFE | -23.62 |
| Energy contribution | -25.65 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2574398 115 - 22407834 UCCUACACCUGCCAGCACAUCCUGGCAUUGCGGCUCCAUCAAUUUCUGAAGCACACGGGCGGGAAAACCACCGAGAAGAUCCUUAAGAAAGAGGAUAUCAAGGAGCUGCGGACGG (((......((((((......))))))..((((((((..................(((..((.....)).))).((..((((((......)))))).))..)))))))))))... ( -41.50) >DroPse_CAF1 855 103 - 1 UCGUACACCUGCCCGCACGUUUUGGCCCUUAAGCUGCAUCAAUUGCUGCAGCAUCCUG-CG-GAA------CAGGCAGUCGCUGAUG----AAGAGUUUAGGGCCCUGCGCAGCU ........((((..(((.(....((((((.(((((.(((((.(.(((((....(((..-.)-)).------...))))).).)))))----...))))))))))))))))))).. ( -34.90) >DroSec_CAF1 800 115 - 1 UCUUACACCUGCCAGCACAUCCUGGCAUUGCGGCUCCACCAAUUUCUGAAGCACACGGGCAGGAAAACCACCGAGAAGAUCCUUAAGAAAGAGGACAUCAAGGAGCUGCAGACGG .......((((((((......))))))((((((((((..................(((...((....)).))).((.(.(((((......)))))).))..))))))))))..)) ( -38.20) >DroSim_CAF1 805 115 - 1 UCCUACACCUGCCAGCACAUCCUGGCAUUGCGGCUCCACCAAUUUCUGAAGCACACGGGCAGGAAAACCACCGAGAAGAUCCUUAAGAAGGAGGACAUCAAGGAGCUGCAGACGG .......((((((((......))))))((((((((((..................(((...((....)).))).((.(.(((((......)))))).))..))))))))))..)) ( -38.30) >DroEre_CAF1 993 115 - 1 UCCUACACCUGCCAGCACAUCCUGGCAUUGCGGCUCCACCAAUUUCUAAAGCACACAGGCAGGAAAACCACCGAGCAGACCCUUAAGAAGGAGGAUAUCAAGGAGCUGCAGACGG .......((((((((......))))))((((((((((.....(((((...((......)).)))))..............((((......)))).......))))))))))..)) ( -34.10) >DroYak_CAF1 919 115 - 1 UCCUUUACCUGCCAGCACAUCCUGGCAUUGCGGCUUCAUCAAUUUCUAAAGCACACGGGCCGGAAAACCAGCGAGCAGAUUCUUAAGAAGGAAGAUAUCAAGGAGCUGCAGAGGG .(((((...((((((......))))))..((((((((.....................((.((....)).))((.....(((((....)))))....))..))))))))))))). ( -34.00) >consensus UCCUACACCUGCCAGCACAUCCUGGCAUUGCGGCUCCACCAAUUUCUGAAGCACACGGGCAGGAAAACCACCGAGAAGAUCCUUAAGAAGGAGGAUAUCAAGGAGCUGCAGACGG .........((((((......))))))((((((((((.....(((((...((......)).)))))......((....((((((......)))))).))..)))))))))).... (-23.62 = -25.65 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:16 2006