Locus 897

Sequence ID 2L_DroMel_CAF1
Location 2,563,115 – 2,563,207
Length 92
Max. P 0.786242
window1450

overview

Window 0

Location 2,563,115 – 2,563,207
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 79.13
Mean single sequence MFE -29.20
Consensus MFE -20.64
Energy contribution -20.92
Covariance contribution 0.28
Combinations/Pair 1.33
Mean z-score -1.47
Structure conservation index 0.71
SVM decision value 0.57
SVM RNA-class probability 0.786242
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2563115 92 - 22407834
AGAACGGAGCGGCGAGUGUCCUUACCAAGCGAGGAUGCUUCCUGCCCUUCGGUGAUGGACCUCGUAUUUGCUUAGGUAAAUCCCCAACCAUA
.(((.((.((((.((((((((((.......)))))))))).)))))))))((.(((..((((.((....))..))))..))).))....... ( -32.20)
>DroGri_CAF1 205695 91 - 1
AUAAUGGUGCGGCAAGUGAGUAUACCAAGCGGGGCUGCUUGUUGGCCUUUGGUGAUGGACCACGCAUUUGUUUGGGUAAGUUUUCGCAUGG-
......(((((((.((..((((..((.....))..))))..)).)))...((.(((..(((..((....))...)))..))).))))))..- ( -24.80)
>DroSec_CAF1 142556 92 - 1
ACAACGGAGCAGCAAGUGUCCUCAACAAACGAGGAUGCUUCCUGCCCUUCGGCGAUGGUCCUCGUAUAUGUUUAGGUGAAUCCCCAACCAUA
.....((.((((.((((((((((.......)))))))))).))))))...((.(((...(((.(.......).)))...))).))....... ( -29.50)
>DroSim_CAF1 147088 92 - 1
ACAACGGAGCAGCGAGUGUCCUCAACAAACGAGGAUGCUUCCUGCCCUUCGGUGAUGGUCCUCGAAUUUGCUUAGGUGAAUCCCCAGCUAUA
.....((.((((.((((((((((.......)))))))))).))))))(((((.(.....).)))))...(((..((.....))..))).... ( -30.40)
>DroEre_CAF1 146987 92 - 1
AGAACGGAGCGGCGAGUGUCCUCAACAAACGAGGAUGCUUCCUGCCCUUCGGCGAUGGUCCUCGUAUAUGUUUAGGUGAGUCCAGAAACAUU
.(((.((.((((.((((((((((.......)))))))))).)))))))))(....(((..((((..((....))..)))).)))....)... ( -31.60)
>DroYak_CAF1 146860 85 - 1
AGAACGGAGCGGCGAGUGUCCUUACCAAACGAGGAUGCUUCCUGCCCUUCGGCGAUGGUCCUCGUAUUUGUUUAGGUGAAU-------GAAU
.(((.((.((((.((((((((((.......)))))))))).))))))))).((((......))))(((..(((....))).-------.))) ( -26.70)
>consensus
AGAACGGAGCGGCGAGUGUCCUCAACAAACGAGGAUGCUUCCUGCCCUUCGGCGAUGGUCCUCGUAUUUGUUUAGGUGAAUCCCCAACCAUA
.....((.((((.((((((((((.......)))))))))).))))))...((.(((...(((...........)))...))).))....... (-20.64 = -20.92 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:14 2006