Locus 894

Sequence ID 2L_DroMel_CAF1
Location 2,550,601 – 2,550,693
Length 92
Max. P 0.931514
window1443

overview

Window 3

Location 2,550,601 – 2,550,693
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 93.19
Mean single sequence MFE -22.93
Consensus MFE -20.76
Energy contribution -20.73
Covariance contribution -0.02
Combinations/Pair 1.15
Mean z-score -1.59
Structure conservation index 0.91
SVM decision value 1.21
SVM RNA-class probability 0.931514
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2550601 92 - 22407834
AUCUUCAGUGUUUGAUCAAAGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAGCUAGCUAAAUGCACUCCUGCUGAAG
..((((((((((((......(((((((....(((.....))))))))))....((....))..)))))..((.....))......))))))) ( -23.90)
>DroSec_CAF1 129911 92 - 1
AUCUUCAGUGUUUGAUCAAAGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG
..((((((((((((......(((((((....(((.....))))))))))....((....))..)))))..((.....))......))))))) ( -23.90)
>DroSim_CAF1 133191 92 - 1
AUCUUCAGUGUUUGAUCAAAGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG
..((((((((((((......(((((((....(((.....))))))))))....((....))..)))))..((.....))......))))))) ( -23.90)
>DroEre_CAF1 134191 92 - 1
AUCUUCAGUGUUUGAUCAAAGUUUGGCCAUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG
..((((((((((((......(((((((....(((.....))))))))))....((....))..)))))..((.....))......))))))) ( -23.90)
>DroYak_CAF1 133936 91 - 1
AUCUUCAGUGUUUGAUCA-AGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAGAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG
..((((((((((((....-.(((((((....(((.....))))))))))((((...))))...)))))..((.....))......))))))) ( -25.70)
>DroAna_CAF1 182027 91 - 1
CUC-UUAAUGUUUGAUGAGAGUUGGGCUGCAAGUGUGCAACUGCCAAACACUCAAAAAGUCAACAAACUAACUAAAUACACUCCGGUUGAAG
...-...........((((.(((.(((((((....))))...))).))).)))).....(((((.....................))))).. ( -16.30)
>consensus
AUCUUCAGUGUUUGAUCAAAGUUUGGCCGUAAGUGUGCAACUGCCAGACACUCGAAAAGUCAACAAACUAGCUAAAUGCACUCCUGCUGAAG
..((((((((((((......(((((((....(((.....))))))))))(((.....)))...)))))..((.....))......))))))) (-20.76 = -20.73 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:07 2006