Locus 893

Sequence ID 2L_DroMel_CAF1
Location 2,550,377 – 2,550,485
Length 108
Max. P 0.824337
window1442

overview

Window 2

Location 2,550,377 – 2,550,485
Length 108
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 96.79
Mean single sequence MFE -30.04
Consensus MFE -28.02
Energy contribution -28.10
Covariance contribution 0.08
Combinations/Pair 1.03
Mean z-score -1.31
Structure conservation index 0.93
SVM decision value 0.69
SVM RNA-class probability 0.824337
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2550377 108 - 22407834
-GAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAGCCCGUGCAC-CCACUGCAAAGUGUGCGCCGGAAACGGA
-.......................((((.........((..((((....(((.((......)).))).....))))..)).-.((((....))))))))(((....))). ( -30.10)
>DroSec_CAF1 129687 108 - 1
-GAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAACCCGUGCAC-CCACUGCAAAGUGUGCGCCGGAAACGGA
-....((((((.(((.(((.((..(((((.........)))))..))......))).)))...)))))).....((..(((-..........)))..))(((....))). ( -29.60)
>DroSim_CAF1 132967 108 - 1
-GAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCGGGGAACCCGUGCAC-CCACUGCAAAGUGUGCGCCGGAAACGGA
-........(((.((.....((..(((((.........)))))..)).........(((.((.((((((...)))).)).)-).))).....)).))).(((....))). ( -30.60)
>DroEre_CAF1 133955 109 - 1
UGAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAAACCGUGCAG-CCACUGCAAAGUGUGCGCCGGAAACGGA
.......((((.(((.(((.((..(((((.........)))))..))......))).)))...))))((....)).....(-(((((....)))).)).(((....))). ( -30.10)
>DroYak_CAF1 133693 110 - 1
UGAAACUGGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAAACCGUGCAACCCACUGCAAAGUGUGCGCCGGAAACGGA
.(..(((..((.........((..(((((.........)))))..)).........(((.((.((.(((....))).))..)).)))))..)))...).(((....))). ( -29.80)
>consensus
_GAAACUAGGCAAACAUAAAUUAACGCAUGCGACAAAUGUGCGGGAAGAAGGAUUAAGUUGGAGCCUGGGAACCCGUGCAC_CCACUGCAAAGUGUGCGCCGGAAACGGA
.....((((((.(((.(((.((..(((((.........)))))..))......))).)))...))))))....(((((((...((((....))))))))).(....))). (-28.02 = -28.10 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:06 2006