Locus 892

Sequence ID 2L_DroMel_CAF1
Location 2,543,111 – 2,543,201
Length 90
Max. P 0.564982
window1441

overview

Window 1

Location 2,543,111 – 2,543,201
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.36
Mean single sequence MFE -19.14
Consensus MFE -11.77
Energy contribution -11.91
Covariance contribution 0.14
Combinations/Pair 1.15
Mean z-score -1.73
Structure conservation index 0.61
SVM decision value 0.06
SVM RNA-class probability 0.564982
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2543111 90 + 22407834
AUU-UAUUUCCUCCCUUCACCCUGGCGGGCCCUUCCAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CCCA---
...-.....(((.((........)).)))............((((.((((.....)))).))))....(((((((.........-)-))----))))--- ( -19.90)
>DroVir_CAF1 230969 96 + 1
UUUUUUUAUCAUCUUUUAU---UUAUGGAGCCUGUAAAUAAGCAUGAUAAUAACUUUAUAGUGUUAAAUGGCGCACAAUAUCA-AAAGGCAGUCCGAAAA
.....(((((((..(((((---((((((...))))))))))).)))))))..........(((((....))))).........-...((....))..... ( -13.80)
>DroSec_CAF1 122573 90 + 1
AUU-UAUUUGCUCCCUUCACCCUGGCGGGCCCUUUCAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CCCA---
...-.....((((((........)).))))...........((((.((((.....)))).))))....(((((((.........-)-))----))))--- ( -22.40)
>DroSim_CAF1 125780 90 + 1
AUU-UAUUUGCUCCCUUCACCCUGGCGGGCCCUUUCAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CCCA---
...-.....((((((........)).))))...........((((.((((.....)))).))))....(((((((.........-)-))----))))--- ( -22.40)
>DroEre_CAF1 125897 90 + 1
AUG-UAUUUCUUCCCUUCUCCCCGGCCGGCCCUUCGAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CCCA---
...-...................(((((((((.........((((.((((.....)))).)))).....)))))..........-.-))----))..--- ( -19.74)
>DroYak_CAF1 126312 90 + 1
AUU-UAUUUCUUCCCUGCUCCCUGGCAAGACCUUCGAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU-U-GG----CUCA---
...-....((((.((........)).))))...........((((.((((.....)))).))))....(((((((.........-)-))----))))--- ( -16.60)
>consensus
AUU_UAUUUCCUCCCUUCACCCUGGCGGGCCCUUCCAAUAUGCACGAUAAUAAUUUUAUAGUGUUAAAUGGGCCACAACAACAU_U_GG____CCCA___
...........................(((((.........((((.((((.....)))).)))).....))))).......................... (-11.77 = -11.91 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:05 2006