Locus 89

Sequence ID 2L_DroMel_CAF1
Location 304,661 – 304,755
Length 94
Max. P 0.993237
window132

overview

Window 2

Location 304,661 – 304,755
Length 94
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 73.08
Mean single sequence MFE -14.70
Consensus MFE -9.25
Energy contribution -9.75
Covariance contribution 0.50
Combinations/Pair 1.19
Mean z-score -2.21
Structure conservation index 0.63
SVM decision value 2.38
SVM RNA-class probability 0.993237
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 304661 94 + 22407834
ACAAAACAAAUAAGAACUCAAAAACAAAAAAGUAGCAGUGGAAGAUUGAAUGUAUUUCAAAUAUGAUUGAUU-GAUGUCAAUAAUGUUUGCUAAC
................................((((((.......(((((.....)))))((((.((((((.-...)))))).)))))))))).. ( -12.90)
>DroPse_CAF1 9150 82 + 1
-----ACAAAAAAAGAAACAAAUACCAAUACGUAGCAGAACCAGAUUAAAUGUGUUCUAAUCAUGAUUGAUGCGCAAUCAAUCAUG--------C
-----...............................(((((((.......)).)))))...((((((((((.....))))))))))--------. ( -16.50)
>DroSim_CAF1 9278 89 + 1
-----ACAAAUAAGAACUCAAAAACAAAAAAGUAGCAGUGGAAGAUUGAAUGUAUUUCAAAUAUGAUUGAUU-GAUGUCAAUAAUGUUUGCUAAC
-----...........................((((((.......(((((.....)))))((((.((((((.-...)))))).)))))))))).. ( -12.90)
>DroPer_CAF1 9171 82 + 1
-----ACAAAAAAAGAAACAAAUACCAAUACGUAGCAGAACCAGAUUAAAUGUGUUCUAAUCAUGAUUGAUGCGCAAUCAAUCAUG--------C
-----...............................(((((((.......)).)))))...((((((((((.....))))))))))--------. ( -16.50)
>consensus
_____ACAAAAAAAAAAACAAAAACAAAAAAGUAGCAGAACAAGAUUAAAUGUAUUCCAAACAUGAUUGAUG_GAAAUCAAUAAUG________C
...........................................(((((((.....)))))))(((((((((.....))))))))).......... ( -9.25 =  -9.75 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:24 2006