| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,536,667 – 2,536,763 |
| Length | 96 |
| Max. P | 0.686320 |
| Location | 2,536,667 – 2,536,763 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.41 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -19.31 |
| Energy contribution | -21.09 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686320 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2536667 96 + 22407834 A-----ACAGCAGCGGAUUGUGAUAAGCAACAGCCUGCAGGGCGGGAACGCAGCUGGAAAAGCCAGAGAAAAAUGCCAGGAAAACUUUGGCGAAACUUUGC .-----.((((.((((..(((........)))..))))...(((....))).)))).......(((((.....(((((((.....)))))))...))))). ( -30.00) >DroSec_CAF1 116191 96 + 1 A-----ACAGCAGCGGAUUGUGAUAAGCAACAGCCUGAAGGGCGGAAACGCAGCUGGAAAAGCCAGAGGAAAAUGCCAGGAAAACUUUGGCGAAACUUUGC .-----.((((..(((..(((........)))..)))....(((....))).)))).......(((((.....(((((((.....)))))))...))))). ( -28.60) >DroSim_CAF1 119219 96 + 1 A-----ACAGCAGCGGAUUGUGAUAAGCAACAGCCUGCGGGGCGGAAACGCAGCUGGAAAAGCCAGAGGAAAAUGCCAGGAAAACUUUGGCGAAACUUUGC .-----.((((.((((..(((........)))..))))...(((....))).)))).......(((((.....(((((((.....)))))))...))))). ( -32.60) >DroEre_CAF1 119482 96 + 1 A-----ACAGCACCGGAUUGCGAUAAGCAACAGCCUGCAGGGCGGAAACGCAGCUGGAAAAGCCAGAGGAAAAUGGCAGGAAAACUUUGGCGAAACUUUCC .-----.((((...((.((((.....))))...))......(((....))).)))).....(((((((................))))))).......... ( -29.59) >DroYak_CAF1 119721 101 + 1 AACGCAACAGCAGCGGAUUGGGAUAAGCAACAGCCUGCAGGGCGGAAACGCAGCUGGAAAAGCCAGAGGAAAAUGGCUGGAAAACUUUGGCGAAACUUUCC ..(((..((((.((((..((..........))..))))...(((....))).))))....(((((........)))))...........)))......... ( -31.80) >DroAna_CAF1 150723 89 + 1 --------AGGAGAGGACUCUGAUAAGCAACAGCCUGCAGCUUGGCA--GCAGCUGCAAAAAAAUGAAAAAACUUGC--GAAAAGUUUUGCUACGAGAUCG --------.((((....))))(((.(((.......(((((((.....--..)))))))..........(((((((..--...)))))))))).....))). ( -20.10) >consensus A_____ACAGCAGCGGAUUGUGAUAAGCAACAGCCUGCAGGGCGGAAACGCAGCUGGAAAAGCCAGAGGAAAAUGCCAGGAAAACUUUGGCGAAACUUUCC .......((((.((((.((((........)))).))))...(((....))).)))).....(((((((................))))))).......... (-19.31 = -21.09 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:00 2006