Locus 888

Sequence ID 2L_DroMel_CAF1
Location 2,531,434 – 2,531,544
Length 110
Max. P 0.732721
window1435

overview

Window 5

Location 2,531,434 – 2,531,544
Length 110
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 84.28
Mean single sequence MFE -24.98
Consensus MFE -19.25
Energy contribution -18.75
Covariance contribution -0.50
Combinations/Pair 1.29
Mean z-score -1.71
Structure conservation index 0.77
SVM decision value 0.43
SVM RNA-class probability 0.732721
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2531434 110 - 22407834
GCU----AGACAUUUGGCAGCUGCAGUCGUCGUAAGUCGAAAGCGGCACGAAGCUCGAUU-AAAGCCACAAGGCAGCAGAG--UCCCAGAAAAUAACGAAAAAAUACAGCACA-AUAC
(((----.....(((((..(((((..(((.(....).)))..))))).....((((....-...(((....)))....)))--).))))).......(........))))...-.... ( -26.60)
>DroEre_CAF1 114310 111 - 1
GCU----AGACAUUUGGCAGCUGCAGUCGUCGUAAGUUGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG--UCACCGAAAAUAACGAAAAAAUACAGCACA-AUAC
(((----.((((((((((.(((((..(((.(....).)))..))))).....)).)))))....(((....)))......)--))..((.......)).........)))...-.... ( -26.00)
>DroYak_CAF1 114521 111 - 1
GCU----AGACAUUUGGCAGCUGCAGUCGUCGUAAGUUGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG--UCACAAAAAAUAACGAAAAACUACAACACA-AUAC
...----.((((((((((.(((((..(((.(....).)))..))))).....)).)))))....(((....)))......)--))............................-.... ( -23.90)
>DroAna_CAF1 144808 115 - 1
ACUUGGAAGACAUUUGGCAGCUGCAAUUGUCGCAAGUUGGAGGCA-CACCGAGCACGAAUAAAAGCCACAAGGCAGCGAAGAGUACCAAAAAA--AAUAGGAACUACAGCACAAAUAC
...........(((((((.(((((..((((.((...(((..(((.-......)).)...)))..)).)))).)))))....(((.((......--....)).)))...)).))))).. ( -23.40)
>consensus
GCU____AGACAUUUGGCAGCUGCAGUCGUCGUAAGUUGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG__UCACAAAAAAUAACGAAAAAAUACAGCACA_AUAC
................((.(((((..(((.(....).)))..))))).................(((....))).))......................................... (-19.25 = -18.75 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:59 2006