Locus 887

Sequence ID 2L_DroMel_CAF1
Location 2,526,524 – 2,526,616
Length 92
Max. P 0.682881
window1434

overview

Window 4

Location 2,526,524 – 2,526,616
Length 92
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -30.32
Consensus MFE -14.10
Energy contribution -15.18
Covariance contribution 1.08
Combinations/Pair 1.23
Mean z-score -2.33
Structure conservation index 0.47
SVM decision value 0.31
SVM RNA-class probability 0.682881
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2526524 92 + 22407834
CAUAUAUAACGCACAUGACCAUACAUACAGUGCC--------ACCUCCAACCUGAUUUUCCGGGAAAA------CUGGUACUGGA---CCAACUGGUGGUACUGAUGGU
.................(((((.....(((((((--------(((.....((((......))))....------.((((.....)---)))...))))))))))))))) ( -29.00)
>DroSec_CAF1 106096 88 + 1
CAUAUAUAACGCACAUGGCCAU----ACAGUGCC--------GCCUCCAACCUGAUUUUCCGGGGAAA------CUGGUACUGGA---CCAACUGGUGGUACUGACGGU
.................(((..----.(((((((--------(((.....((((......))))....------.((((.....)---)))...))))))))))..))) ( -28.10)
>DroSim_CAF1 109425 88 + 1
CAUAUAUAACGCACAUGGCCAU----AUAGUGCC--------GCCUCCAACCUGAUUUUCCGGGGAAA------CUGGUACUGGA---CCAACUGGUGGUACUGAUGGU
.................(((((----.(((((((--------(((.....((((......))))....------.((((.....)---)))...))))))))))))))) ( -30.00)
>DroEre_CAF1 109644 97 + 1
CAUAUAUAACGCACAUGGCCAU----ACAGCAGC--------ACCUCCAACCUGAUUUUCCGGGGAAACUGGCACUGGUACUGGUACUCGUACUGGACCAACUGGUGCU
..........((...((.....----.))))(((--------(((.(((.((((......)))).....)))...((((.(..(((....)))..)))))...)))))) ( -25.70)
>DroYak_CAF1 109728 98 + 1
CAUAUAUAACGCACAUGGCCAU----ACAGUGCCACCGUACCAGCUCCAACCUGAUUUUCCGGGGGAA----AACUGGUACUGGA---CCGACUGGUCCAACUGGUGGU
..........((((.((.....----.))))))(((((((((((.(((..((((......))))))).----..)))))))((((---((....))))))...)))).. ( -38.80)
>consensus
CAUAUAUAACGCACAUGGCCAU____ACAGUGCC________ACCUCCAACCUGAUUUUCCGGGGAAA______CUGGUACUGGA___CCAACUGGUGGUACUGAUGGU
.................(((((.....(((((((................((((......))))..........(..((..(((....)))))..).)))))))))))) (-14.10 = -15.18 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:58 2006