Locus 886

Sequence ID 2L_DroMel_CAF1
Location 2,526,093 – 2,526,191
Length 98
Max. P 0.998215
window1433

overview

Window 3

Location 2,526,093 – 2,526,191
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 72.40
Mean single sequence MFE -22.90
Consensus MFE -7.50
Energy contribution -9.14
Covariance contribution 1.64
Combinations/Pair 1.08
Mean z-score -2.67
Structure conservation index 0.33
SVM decision value 3.04
SVM RNA-class probability 0.998215
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2526093 98 - 22407834
AAAAAAAAAUUAUUUUCUCAGCUUUAGCCUCCGGAAACACCCAUUCCACACAUUCACCCAACUAUGGCCUAAUGAAAAUUAGUUGGGCUGGAAAAGCU
...................((((((.......((((.......)))).....((((((((((((...............)))))))).)))))))))) ( -21.36)
>DroSim_CAF1 109017 82 - 1
----------------CCCAGCUUUAGGCUGCUGAAACUCCCAUUCCAUACAUUCACCAAACUAUGGCCUAAUGAAAAUUAGUUGGGCUGGAAAAGCU
----------------.((((((((((....)))))....(((..(((((............))))).(((((....))))).))))))))....... ( -18.50)
>DroEre_CAF1 109231 95 - 1
---AAAACACUCUUUUCUCAGCUUUAGGCUGCUGAAACUCCCAUUCCGCACAUUGGCCCAACUAAGGCCUAAUGAAAAUUAGUUGGGCUGCAAAAACU
---..............(((((........)))))............(((.....((((((((((.............)))))))))))))....... ( -23.62)
>DroYak_CAF1 109316 95 - 1
---AAAACACGGUUUUCUCAGCUUUAGGCUGCUGAAACUCCCAUUCCACACAUGCCCAAAACUAAGACCUAAUGGAAAUUAGUUGGGCUGGAAAAGCC
---.......(((((..(((((........)))))........(((((.....(((((..(((((..((....))...)))))))))))))))))))) ( -27.10)
>DroAna_CAF1 131417 87 - 1
---AUAAAAG--UUUUUUCACGAUUA-UCUGAGGAAACUU-----ACACCCUUGGUCUCAACUUUGUCAUAAUGAGAAUGAGUUGGGCCGGAAAAACC
---......(--(((((((.......-..((((....)))-----).......((((.((((((..((.......))..)))))))))))))))))). ( -23.90)
>consensus
___AAAAAAC__UUUUCUCAGCUUUAGGCUGCUGAAACUCCCAUUCCACACAUUCACCCAACUAUGGCCUAAUGAAAAUUAGUUGGGCUGGAAAAGCU
.................(((((........)))))..............................((((((((........))))))))......... ( -7.50 =  -9.14 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:57 2006