| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,525,750 – 2,525,847 |
| Length | 97 |
| Max. P | 0.737193 |
| Location | 2,525,750 – 2,525,847 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 77.08 |
| Mean single sequence MFE | -20.97 |
| Consensus MFE | -9.57 |
| Energy contribution | -11.09 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.737193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2525750 97 - 22407834 AC----UGCAUGCAACUCGUGUGCUGUGUAUUUAUUAGAUUAUUUUUUGGAUUUCAGCAACUGGCUAAAAUUCAAUUUAAUUGAUACAGAAUAUUAGAUUU ..----.((((((.....))))))(.((((((.(((((((.......(((((((.(((.....))).)))))))))))))).)))))).)........... ( -21.41) >DroSec_CAF1 105424 97 - 1 AC----UCCAUGCAACUUGUGUGCUGUGUAUUUAUUAGAUUAUUUUUUGGAUUUCGGCAACUGGCUAAAAUUCAAUUUAAUUGAUACAGAAUAUUAGAUUU ..----.........((.((((.((((((....(((((((.......(((((((..((.....))..))))))))))))))..)))))).)))).)).... ( -19.71) >DroSim_CAF1 108658 97 - 1 AC----UCCAUGCAACUUGUGUGCUGUGUAUUUAUUAGAUUAUUUUUUGGAUUUCAGCAACUGGCUAAAAUUCAAUUUAAUUGAUACAGAAUAUUAGAUUU ..----.........((.((((.((((((....(((((((.......(((((((.(((.....))).))))))))))))))..)))))).)))).)).... ( -19.01) >DroEre_CAF1 108894 93 - 1 AU----CUAAUGAAAGUCGUUUGCUGUGUA----UUGGAUUAUUUUUGGGACUUCACCAACCGGCUAAAAUUCAAUUUAAUUGAUACAGAAUAUUAGAUUU ((----((((((..(((((.(((.((.((.----(..((.....))..).))..)).))).))))).....(((((...))))).......)))))))).. ( -17.00) >DroYak_CAF1 109005 97 - 1 AG----CCCAUGAAACUCGUGUGCUGCGUAUUUAUUUGAUUACAUUUUGGAUUUCAGCAACUGGCUGAAAUUCAAUUUAAUUGAUACAGAAUAUUAGAUUU ((----(.((((.....)))).)))..((((((..(..((((....((((((((((((.....))))))))))))..))))..)....))))))....... ( -25.80) >DroAna_CAF1 131046 89 - 1 UUAAAUUUUGU-UAGGCCAUUUGCAGUG-AUUGGUUUUAUUUGUUUUUUGAAUUCGG--------AAAAAUCAAAUAAAAUUGAUACAGCAUGCC--AUUU ...........-..(((....(((.(((-.(..(((((((((((((((((....)))--------))))..))))))))))..)))).))).)))--.... ( -22.90) >consensus AC____UCCAUGCAACUCGUGUGCUGUGUAUUUAUUAGAUUAUUUUUUGGAUUUCAGCAACUGGCUAAAAUUCAAUUUAAUUGAUACAGAAUAUUAGAUUU ...............((.((((.((((((....(((((((.......(((((((.(((.....))).))))))))))))))..)))))).)))).)).... ( -9.57 = -11.09 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:55 2006