Locus 881

Sequence ID 2L_DroMel_CAF1
Location 2,510,765 – 2,510,855
Length 90
Max. P 0.520050
window1426

overview

Window 6

Location 2,510,765 – 2,510,855
Length 90
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 83.47
Mean single sequence MFE -27.30
Consensus MFE -21.45
Energy contribution -21.12
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -1.44
Structure conservation index 0.79
SVM decision value -0.03
SVM RNA-class probability 0.520050
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2510765 90 - 22407834
ACCUGCUGCGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCACCGCCG------------------------AAGCUGAGGCUGACA
.((((((((((((((((((((..(((((.....((.......))...)))))...))))))))....))))))..------------------------.)))..)))...... ( -23.40)
>DroSec_CAF1 90631 90 - 1
ACCUGCUGCGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCACGGCCA------------------------AAGCUGAGGCUGACA
....((((.((((((((((((..(((((.....((.......))...)))))...)))))))).)))).))))..------------------------.(((....))).... ( -25.80)
>DroEre_CAF1 93869 89 - 1
ACCUGCUGCGGUGACAUUUUACGGCUU-UUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCAUCGCCG------------------------AGGCUGAGGCUGACA
....(((.(((((((((((((..((((-(....((.......))...)))))...)))))))).))))...((..------------------------..)).).)))..... ( -23.00)
>DroYak_CAF1 93802 114 - 1
ACCUGCUGCGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCGCCGCCGAAGCUGAUGCUGAUGCUGAUGCUGAGGCUGAGGCUGACA
....(((((((((((((((((..(((((.....((.......))...)))))...)))))))).)))))).(((..(((....((....))....)))..)))...)))..... ( -37.30)
>DroAna_CAF1 111915 91 - 1
ACCUGCUGUGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCGCCGCCU-----------------------AAAGCUGAGGCUGACA
....((.((((((((((((((..(((((.....((.......))...)))))...)))))))).)))))).))..-----------------------..(((....))).... ( -25.40)
>DroPer_CAF1 109543 112 - 1
ACCUGCUGGGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAAGCAUUUAAAAUGUGCACCACCGCCA--CCAAAAGCUGAAGCCGAAGCCGAAGCCGAGGCUGACA
..(.(((((((((((((((((..(((((.....((.......))...)))))...)))))))).)))).))((..--......))...))).).((((........)))).... ( -28.90)
>consensus
ACCUGCUGCGGUGACAUUUUACGGCUUUUUCUUUGUUAAUUUCAUUUGAGGCAUUUAAAAUGUGCACCACCGCCG________________________AAGCUGAGGCUGACA
....((.(.((((((((((((..(((((.....((.......))...)))))...)))))))).)))).).))...........................(((....))).... (-21.45 = -21.12 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:50 2006