Locus 88

Sequence ID 2L_DroMel_CAF1
Location 303,291 – 303,384
Length 93
Max. P 0.991754
window131

overview

Window 1

Location 303,291 – 303,384
Length 93
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 94.73
Mean single sequence MFE -17.28
Consensus MFE -15.74
Energy contribution -15.58
Covariance contribution -0.16
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.91
SVM decision value 2.29
SVM RNA-class probability 0.991754
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 303291 93 + 22407834
ACAGCUUGCUAGAAGCUCUUUGUAGAAGAACGAAAUUUUCUAAUUGGAAAAGUAAUCUUAUUAACAAUACGAGUAAGAUUAAUUUUAUACAAA
..(((((.....))))).....(((((((......))))))).(((.((((.((((((((((.........)))))))))).))))...))). ( -17.10)
>DroSec_CAF1 7511 92 + 1
ACAGCUUGCUAGAAGCUCUUUGUAGAAGAACGAAAUUUUCUAAUUGGA-AAGUAAUCUUAUUAACAAUACGAGUAAGAUUAAUUUUAUACAAA
..(((((.....)))))..(((((.((((.....(((((((....)))-))))(((((((((.........)))))))))..)))).))))). ( -16.60)
>DroSim_CAF1 7913 92 + 1
ACAGCUUGCUAGAAGCUCUUUGUAGAAGAACGAAAUUUUCUAAUUGGA-AAGUAAUCUUAUUAACAAUACGAGUAAGAUUAAUUUUAUACAAA
..(((((.....)))))..(((((.((((.....(((((((....)))-))))(((((((((.........)))))))))..)))).))))). ( -16.60)
>DroEre_CAF1 7882 93 + 1
AUAGCUUGCUAGAAGCUCUGUGUAGAGGAACGAAAUUUUCUAAUUGGAAGAGUAAUCUUAUUAACAAUUCGAGUAAGAUUAAUUUUAUAUAAA
..(((((.....))))).(((((((((........((((((....)))))).((((((((((.........)))))))))).))))))))).. ( -17.90)
>DroYak_CAF1 8124 92 + 1
AAAGCUUGCUAGAAGCUCAGUGUAGAAGAACGAAAUUUUCUAAUUGGAAAACUAAUCUUAUUAACA-UACGAGUAAGAUUAAUUUUAUAUAAA
..(((((.....)))))((((.(((((((......))))))))))).((((.((((((((((....-....)))))))))).))))....... ( -18.20)
>consensus
ACAGCUUGCUAGAAGCUCUUUGUAGAAGAACGAAAUUUUCUAAUUGGAAAAGUAAUCUUAUUAACAAUACGAGUAAGAUUAAUUUUAUACAAA
..(((((.....))))).....(((((((......))))))).(((.((((.((((((((((.........)))))))))).))))...))). (-15.74 = -15.58 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:24 2006