Locus 877

Sequence ID 2L_DroMel_CAF1
Location 2,499,574 – 2,499,671
Length 97
Max. P 0.512159
window1420

overview

Window 0

Location 2,499,574 – 2,499,671
Length 97
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 83.82
Mean single sequence MFE -43.25
Consensus MFE -32.81
Energy contribution -34.28
Covariance contribution 1.47
Combinations/Pair 1.24
Mean z-score -1.54
Structure conservation index 0.76
SVM decision value -0.04
SVM RNA-class probability 0.512159
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2499574 97 + 22407834
UGGGUGGGUCAUUUCCUGGUGGGUAAUCAGCGACAGCUGGCUACUCGG--AAAACGCCAUGGUGGUCUGGCGUGGGUCAUGGCCACCCGGUGACCUCGU
.((((((.((((..(((..((((((..((((....))))..)))))).--...((((((........)))))))))..))))))))))(....)..... ( -42.90)
>DroSec_CAF1 78496 97 + 1
UGGGUGGGUCAUUUCCUGGUGGGUAAUCAGCGACAGCUGGCUACUCGG--AAAGCGCCAUGGUGGCCUGGCGUGGGUCAGGGCCACCCGGUGACCUCGU
.....(((((.(((((....(((((..((((....))))..)))))))--)))..(((..(((((((((((....)))).))))))).))))))))... ( -45.60)
>DroSim_CAF1 81887 97 + 1
UGGAUGGGUCAUUUCCUGGUGGGUAAUCAGCGACAGCUGGCUACUCGG--AAAGCGCCAUGGUGGCCUGGCGUGGGUCAGGGCCACCCGGUGACCUCGU
...(((((((.(((((....(((((..((((....))))..)))))))--)))..(((..(((((((((((....)))).))))))).))))))).))) ( -45.90)
>DroEre_CAF1 82099 97 + 1
UCGGUGGGUCAUUUCCUGGCGGGUAAUCAGCGACAGCUGGCUGCUCGG--AGUACACCCUGGUGGGCUGGCGUGGGUCAGGGCCACCCGGUGACCUCGG
..(.((((......)))).)(((((..((((....))))..))))).(--((..((((..(((((.(((((....)))).).))))).))))..))).. ( -42.50)
>DroYak_CAF1 81947 99 + 1
UUGGUGGGUCACUUCCUGGCGGGUAAUCAGCGACAGCUGGCUGCUCGGCAAAAACACCCUGGUGUCCUGGCGUGGGUCAUGGCCAGCCGGUGACCUCGU
.....((((((((..((((((((((..((((....))))..)))))(((.....(((((.((...)).)).))).)))...)))))..))))))))... ( -44.90)
>DroAna_CAF1 101044 92 + 1
UCGGUGGGUCAUUUCCUGGCGGGUAAUCAGCGACAGCUGGCUCUUCGA--GUCCGGCCGAGG-----GGACGUGGGUCAGGACCACCGCCCAACUACCA
..(((((((((.....))))((((..(((((....)))))......(.--((((((((.((.-----...).).)))).)))))...))))..))))). ( -37.70)
>consensus
UGGGUGGGUCAUUUCCUGGCGGGUAAUCAGCGACAGCUGGCUACUCGG__AAAACGCCAUGGUGGCCUGGCGUGGGUCAGGGCCACCCGGUGACCUCGU
.....((((((((......((((((..((((....))))..)))))).............(((((((((((....)))).))))))).))))))))... (-32.81 = -34.28 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:45 2006