Locus 875

Sequence ID 2L_DroMel_CAF1
Location 2,495,022 – 2,495,120
Length 98
Max. P 0.995825
window1417

overview

Window 7

Location 2,495,022 – 2,495,120
Length 98
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 68.91
Mean single sequence MFE -18.46
Consensus MFE -11.58
Energy contribution -12.46
Covariance contribution 0.88
Combinations/Pair 1.27
Mean z-score -2.25
Structure conservation index 0.63
SVM decision value 2.62
SVM RNA-class probability 0.995825
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2495022 98 + 22407834
GUGGAAUGAGGAGUUGGCUCCUCCGCUCUCAUCUUCAUACCCAAAACCCAUCCUUCCCUUUUGCCAA-AACCCAUCCCACUCAUCUUCGUUUCGUUUUC
((((.(((.((..(((((............................................)))))-..))))).))))................... ( -16.40)
>DroSec_CAF1 73985 84 + 1
GUGGGAUGAGGAGUUGGCUCCUCCGCUCUCAUCC-------------CCAUCCUUCC-CUUUGCCAA-ACGCCAUCCCACUCAUCUUCGUUUCGUUUUC
(((((((((((((....))))))...........-------------..........-....((...-..)).)))))))................... ( -20.70)
>DroSim_CAF1 77366 84 + 1
GUGGGAUGAGGAGUUGGCUCCUUCGCUCCCAUCC-------------UCAUCCUUCC-UUUUGCCAA-ACCCCAUCCCACUCAUCUUCGUUUCGUUUUC
((((((((.((..(((((................-------------..........-....)))))-..))))))))))................... ( -23.91)
>DroYak_CAF1 77285 96 + 1
GUGGGAGCAGGAGUUGCCUCCUCCGCUCUUGUCCA-AUUCCCCAUCCCCAUUCUUCC-CUUUGCCAA-ACCCCAUCCCACUCAUUUCCGUUUCGUUUUC
((((((((((((((.(......).))))))))...-.....................-...((....-....))))))))................... ( -16.20)
>DroAna_CAF1 96604 81 + 1
GUGGGGUGACAAGUAGAAUUUCCCGUGUACA-----------------CAUGCAUCC-CUGCCCUGAAUCUUCGCCAGGCUCAUCUCCGUUUUAUUUCC
(.(((((((...((((.......((((....-----------------)))).....-))))((((.........)))).))))))))........... ( -15.10)
>consensus
GUGGGAUGAGGAGUUGGCUCCUCCGCUCUCAUCC_____________CCAUCCUUCC_CUUUGCCAA_ACCCCAUCCCACUCAUCUUCGUUUCGUUUUC
(((((((((((((....)))))..((....................................))........))))))))................... (-11.58 = -12.46 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:42 2006