Locus 873

Sequence ID 2L_DroMel_CAF1
Location 2,488,876 – 2,488,982
Length 106
Max. P 0.931620
window1415

overview

Window 5

Location 2,488,876 – 2,488,982
Length 106
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 91.99
Mean single sequence MFE -25.97
Consensus MFE -22.68
Energy contribution -23.35
Covariance contribution 0.67
Combinations/Pair 1.09
Mean z-score -1.97
Structure conservation index 0.87
SVM decision value 1.21
SVM RNA-class probability 0.931620
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2488876 106 - 22407834
AAUAAAAGUACAGGGGAAACGAAAAGUCGAACUCCCAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG
.............((((..(((....)))...)))).(((((...)))))........(((((((...(..((..(((..-......)))..))..)))))))).-.. ( -22.70)
>DroSec_CAF1 68146 101 - 1
-----AAGUACAGGGGAAACGAGAAGUCGGACUCCCAACCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG
-----........(((...((.....((((((((((.(((((...)))))........(((....)))))).))))))).-......)).)))............-.. ( -28.70)
>DroSim_CAF1 71527 101 - 1
-----AAGUACAGGGGAAACGAGAAGUCGGACUCCCAACCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG
-----........(((...((.....((((((((((.(((((...)))))........(((....)))))).))))))).-......)).)))............-.. ( -28.70)
>DroEre_CAF1 71218 106 - 1
ACCAAAAGUACAGGGGAAACGAGAAGUCGGACUCCCAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG
.............(((...((.....((((((((((.(((((...)))))........(((....)))))).))))))).-......)).)))............-.. ( -29.00)
>DroYak_CAF1 71153 106 - 1
CCCAAAAGUACAGGGGAAACGAGAAGUCGAACUCCCAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA-AAGAUGCGGCUCAAACAAAUCAUA-AG
(((.........)))((..((.....(((.((((((.(((((...)))))........(((....)))))).))).))).-......))..))............-.. ( -24.50)
>DroAna_CAF1 79820 99 - 1
-----AAAUACA----AAAAGAGAAGUCAGACUCCGAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCUGAAAAAGAUGCGGCUCAAACAAAUCAUAAAG
-----.......----....(((...(((((((....(((((...))))).((((...(((....))))))))))))))...........)))............... ( -22.24)
>consensus
_____AAGUACAGGGGAAACGAGAAGUCGGACUCCCAGCCAGAAACUGGUAACCCAAAGUGAUUUCACGGGUGGUCCGAA_AAGAUGCGGCUCAAACAAAUCAUA_AG
.............(((...((.....((((((((((.(((((...)))))........(((....)))))).)))))))........)).)))............... (-22.68 = -23.35 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:40 2006