| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,487,516 – 2,487,610 |
| Length | 94 |
| Max. P | 0.716713 |
| Location | 2,487,516 – 2,487,610 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.19 |
| Mean single sequence MFE | -20.89 |
| Consensus MFE | -13.60 |
| Energy contribution | -14.55 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716713 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2487516 94 + 22407834 -----------UCCUCUGAUGGCUUUCGGAAAUGGCCCACAGCCAUGCGGGGUCCUCAUCUUUUAUUAUUAUUUUAUUUCACAUCUUGGGCCUCC--UUUUUGUUUG -----------...(((((......))))).(((((.....)))))..(((((((...........((......))...........))))))).--.......... ( -19.85) >DroSec_CAF1 66659 94 + 1 -----------UCCUCUGAUGGCUUUCGGAAAUGGCCCACAGCCAUGCGGGGUCCUCAUCUUUUAUUAUUAUUUUAUUUCACAUCUUGGGCCUCG--CUUUUGUUUG -----------...(((((......))))).(((((.....)))))(((((((((...........((......))...........))))))))--)......... ( -25.75) >DroSim_CAF1 70051 94 + 1 -----------UCCUCUGAUGGCUUUCGGAAAUGGCCCACAGCCAUGCGGGGUCCUCAUCUUUUAUUAUUAUUUUAUUUCACAUCUUGGGCCUCG--CUUUUGUUUG -----------...(((((......))))).(((((.....)))))(((((((((...........((......))...........))))))))--)......... ( -25.75) >DroEre_CAF1 69994 94 + 1 -----------UCCUCUGAUGGCUUUAGGAAAUGGCCCACAGCCAUGCGGGGUCCUGAUCUUUUAUUAUUAUUUUAUUUCACAUCUCGGGCCUCC--UUUUUGUUUG -----------.......((((((...((......))...))))))..(((((((.(((.......((......))......)))..))))))).--.......... ( -19.22) >DroYak_CAF1 69844 96 + 1 -----------UCCUCUGAUGGCUUUAGGAAAUGGCCCACAGCCAUGCGGGGUCCUCAUCUUUUAUUAUUAUUUUAUUUCACAUCUUGGGCCUCUGUUUUUUGUUUG -----------.......((((((...((......))...))))))(((((((((...........((......))...........))))).)))).......... ( -19.35) >DroMoj_CAF1 105458 93 + 1 UUUUUGUUUGUUUUUUUUAUGAUUUCAGGAAAUGGCCAAAAGCCAUGAAG---CAUCAUCUUUUCAAUUUGU----AUAUAUAUAUAGAG-------AAGAUAUAUG ........((((((.(((.((....)).)))(((((.....)))))))))---))..((((((((.((.(((----....))).)).)))-------)))))..... ( -15.40) >consensus ___________UCCUCUGAUGGCUUUAGGAAAUGGCCCACAGCCAUGCGGGGUCCUCAUCUUUUAUUAUUAUUUUAUUUCACAUCUUGGGCCUCC__UUUUUGUUUG ..................((((((...((......))...))))))..(((((((................................)))))))............. (-13.60 = -14.55 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:39 2006