Locus 87

Sequence ID 2L_DroMel_CAF1
Location 303,028 – 303,123
Length 95
Max. P 0.907507
window130

overview

Window 0

Location 303,028 – 303,123
Length 95
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 83.87
Mean single sequence MFE -26.97
Consensus MFE -22.48
Energy contribution -23.20
Covariance contribution 0.72
Combinations/Pair 1.05
Mean z-score -1.97
Structure conservation index 0.83
SVM decision value 1.05
SVM RNA-class probability 0.907507
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 303028 95 - 22407834
CUGAUGUACACAAUCGGCGAUGGCCGAAAUAAUAGCAUUGCUAUUGUAACACUAGGUAACGCGUGUUACUUUGGCUCUCAUU-------------ACUCAAUAUCGUA-----------
..(((((......(((((....)))))............((((..(((((((..(....)..)))))))..)))).......-------------.....)))))...----------- ( -25.60)
>DroSec_CAF1 7260 95 - 1
CUGAUGUACACAAUCGGCGAGGGCCGAAAUAAUAGCAUUGCGAUUGUAACACUAUGUAACGCGUGUUACUUUGGCUCUCAUU-------------ACUCAAUAUCGUA-----------
(((((.......))))).((((((((((.(((((((.(((((...(.....)..))))).)).))))).))))))))))...-------------.............----------- ( -26.60)
>DroSim_CAF1 7661 95 - 1
CUGAUGUACACAAUCGGCGAGGGCCGAAAUAAUAGCAUUGCGAUUGUAACACUAUGUAACGCGUGUUACUUUGGCUCUCAUU-------------ACUCAAUAUCGUA-----------
(((((.......))))).((((((((((.(((((((.(((((...(.....)..))))).)).))))).))))))))))...-------------.............----------- ( -26.60)
>DroEre_CAF1 7605 106 - 1
CUGAUGUACACAAUCGGCGAUGGCCGAAAUAAUAGCAUUGCCAUUGUAACACUUAGCAACGCGUGUUACUUUGGCUCUCAUU-------------ACUCAAUUUCGAAACUCGAGUAGC
..(((((......(((((....))))).......)))))((((..(((((((..........)))))))..)))).....((-------------((((.............)))))). ( -29.54)
>DroYak_CAF1 7835 119 - 1
CUGAUGUACACAAUCGGCGAUGGCCGAAAUAAUAGCAUUGCCAUUGUAACACUUAGUAACGCGUGUUACUUCGGCUCUCAUUCUCAAUUCUUAAUUCUCGAUAUCGAAACUUGAGUCGC
..(((((......(((((....))))).......)))))(((...(((((((..........)))))))...)))..............(((((.(.(((....))).).))))).... ( -26.52)
>consensus
CUGAUGUACACAAUCGGCGAUGGCCGAAAUAAUAGCAUUGCCAUUGUAACACUAAGUAACGCGUGUUACUUUGGCUCUCAUU_____________ACUCAAUAUCGUA___________
..(((((......(((((....)))))............((((..(((((((..........)))))))..)))).........................))))).............. (-22.48 = -23.20 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:22 2006