Locus 868

Sequence ID 2L_DroMel_CAF1
Location 2,475,982 – 2,476,072
Length 90
Max. P 0.623881
window1407

overview

Window 7

Location 2,475,982 – 2,476,072
Length 90
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.93
Mean single sequence MFE -13.89
Consensus MFE -11.10
Energy contribution -11.21
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.14
Structure conservation index 0.80
SVM decision value 0.18
SVM RNA-class probability 0.623881
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2475982 90 + 22407834
GCGUAAACAAGCGUCUCCAAUUGCC--CCAUAA--AAACUCAAUUGCAGACAAAUUGUCGCCAAAAA-A----AGCUGUUUAUCUUCGAA----CACAACAAG
..(((((((.((((((.((((((..--......--.....)))))).))))...(((....)))...-.----.))))))))).......----......... ( -15.12)
>DroPse_CAF1 64693 89 + 1
GCGUAAACAGGCGUCUCCAAUUUCCCCCCAUAAAAAAACUCAAUUGCAGACAAAUUGUCGCCAAA-AAAAAAGAGCUACAUAUUU-------------ACUCG
(((...((((..((((.(((((...................))))).))))...)))))))....-......(((..........-------------.))). ( -10.31)
>DroSec_CAF1 55246 89 + 1
GCGUAAACAAGCGUCUCCAAUUGCC--CCAUAA--AAACUCAAUUGCAGACAAAUUGUCGCCAAA-A-A----AGCUGUUUAUCUUCGAA----CACAACAAG
..(((((((.((((((.((((((..--......--.....)))))).))))...(((....))).-.-.----.))))))))).......----......... ( -15.12)
>DroSim_CAF1 58251 89 + 1
GCGUAAACAAGCGUCUCCAAUUGCC--CCAUAA--AAACUCAAUUGCAGACAAAUUGUCGCCAAA-A-A----AGCUGUUUAUCUUCGAA----CACAACAAG
..(((((((.((((((.((((((..--......--.....)))))).))))...(((....))).-.-.----.))))))))).......----......... ( -15.12)
>DroAna_CAF1 65346 92 + 1
GCGUAAACAAGCGUCUCCAAUUGCC--CCAUUA--AAACCCAAUUGCAGACAAUUUGUCGCCGAA-A-A----AUAAGUCUG-CUCCGCAGAAGCCAAACACG
(((...(((((.((((.((((((..--......--.....)))))).))))..))))))))....-.-.----.....((((-(...)))))........... ( -17.02)
>DroPer_CAF1 62515 86 + 1
GCGUAAACAGGCGUCUCCAAUUUCCC-CCAUAAA-AAACUCAAUUGCAGACAAAUUGUCGCCAAA-A-AAAAGAGCUACAUAUUU-------------ACUCG
(.(((((.....((((.(((((....-.......-......))))).))))....(((.(((...-.-....).)).)))..)))-------------)).). ( -10.63)
>consensus
GCGUAAACAAGCGUCUCCAAUUGCC__CCAUAA__AAACUCAAUUGCAGACAAAUUGUCGCCAAA_A_A____AGCUGUUUAUCUUCGAA____CACAACAAG
(((...((((..((((.((((((.................)))))).))))...))))))).......................................... (-11.10 = -11.21 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:33 2006