| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,462,588 – 2,462,692 |
| Length | 104 |
| Max. P | 0.547182 |
| Location | 2,462,588 – 2,462,692 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 85.04 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -21.67 |
| Energy contribution | -21.83 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2462588 104 - 22407834 UU----CCGAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUGUCUACAUUC---GUAA---UCCCAAUCUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUCUA ..----..((.(((((((...(((((.........((..((((((((....)))))---))).---)).........)))))...((((........))))..))))))))).. ( -29.07) >DroVir_CAF1 59610 104 - 1 CU----GAGAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUGUCUACAAUUUGUAUA------UCACUCUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUCGA ..----..((.(((((((...(((((......((.((..((..(((.......)))..))..------)).))....)))))...((((........))))..))))))))).. ( -27.20) >DroGri_CAF1 59860 106 - 1 UU----GAGAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUGUCUACAACGUU-GCAA---UUUCUCACUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUCGA ..----..((.(((((((...((((((((....(((((...(((....)))....)))-))..---....)))....)))))...((((........))))..))))))))).. ( -27.90) >DroWil_CAF1 59717 104 - 1 --------AAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUGUCUACUUAA--UGUAAAUUUACCGCUCUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUAUA --------...(((((((...(((((......((((((........)))(((....--.)))........)))....)))))...((((........))))..))))))).... ( -25.30) >DroMoj_CAF1 63502 111 - 1 UUUUACAAGAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUGUCUACACUUUCAGUAU---UUUCACUCUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUCGA ........((.(((((((...((((((((((((........))).....(((.......))).---.))))......)))))...((((........))))..))))))))).. ( -25.10) >DroPer_CAF1 46048 104 - 1 UU----GGAAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUGUCUACACUA---GGAA---ACUCUUUCUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUCUA .(----(((..(((((((((.((.......)).))......(((((.........(---(...---.)).........)))))..((((........))))..))))))))))) ( -28.17) >consensus UU____GAGAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUGUCUACAAUA___GUAA___UCUCACUCUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUCGA ...........(((((((...(((((.(..(((........))).((....)).......................))))))...((((........))))..))))))).... (-21.67 = -21.83 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:30 2006