Locus 864

Sequence ID 2L_DroMel_CAF1
Location 2,459,296 – 2,459,392
Length 96
Max. P 0.890403
window1403

overview

Window 3

Location 2,459,296 – 2,459,392
Length 96
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 96.53
Mean single sequence MFE -11.60
Consensus MFE -11.60
Energy contribution -11.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 1.00
SVM decision value 0.96
SVM RNA-class probability 0.890403
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2459296 96 + 22407834
GAUAUUGCAUAUGUAACUCUCUUGUAUAUGUACUAAACACCUAUAUACUUUAUAUGCGGUACACACUCACUCACCCCCAUUAGCAA-ACACACAACC
..(((((((((((..........(((((((...........)))))))..))))))))))).........................-.......... ( -11.60)
>DroSec_CAF1 38457 94 + 1
GAUAUUGCAUAUGUAACUCUCUUGUAUAUGUACUAAACACCUAUAUACUUUAUAUGCGGUACACACUCACUCACC--CAUAAGCAA-ACACACAACC
..(((((((((((..........(((((((...........)))))))..)))))))))))..............--.........-.......... ( -11.60)
>DroSim_CAF1 40033 94 + 1
GAUAUUGCAUAUGUAACUCUCUUGUAUAUGUACUAAACACCUAUAUACUUUAUAUGCGGUACACACUCACUCACC--CAUAAGCAAAACACACAAC-
..(((((((((((..........(((((((...........)))))))..)))))))))))..............--...................- ( -11.60)
>consensus
GAUAUUGCAUAUGUAACUCUCUUGUAUAUGUACUAAACACCUAUAUACUUUAUAUGCGGUACACACUCACUCACC__CAUAAGCAA_ACACACAACC
..(((((((((((..........(((((((...........)))))))..))))))))))).................................... (-11.60 = -11.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:29 2006